RLG00000009056

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000368
Physical Location & Seq
Reverse (-)
45751060 .. 45755640
4581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009056

Sequence Viewer

Length: 531 bp
ATGGCCCCACTTCGGCATTGGCCCTATCGGGCGGGGCAGTCGGCGGAGGCTCCTTCTCATCCGGCGGCTCTTCTTCATCATCATCATCATCCTCAATCTTCTTCTAGTTACTACAATTCCGGCGATGCACCAACCCTCCAAACGGATCTCAATCGGATTGCTGAAACCGCAGATACTTCCACCTCTCAGGGTTGGAGCAATGTTTTGGCAGGGGCAACAATAAGTTTGCTTCAGAATCTTGACTACTGCATATCAGGTTATTCATCAGCAGCTACTGGATCCCAGAGTGAATATATGGCGCTGCCAACAGTTGATGACAGTAGTACCTTGAAGCAAGCATTGCAAAACCTCAAATCCATTCCCTCGAACAAAATATTGCTCGTCGAGCTCGTCAATTGTGGCCATGGCTTTCTTGATGACCCAATCGACAGCCTTGCTGGGCTGGTCGTATCCGAGCCTGACGCCGTGGTCCCTGGGGCCTTTGGCGGTGTAGACCTTGCTGTGACGGTCCTTCCGGTCGGTGGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

177

Amino Acids

18.4

Weight (kDa)

4.91

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 42 - 94 7.8e-10 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 492
AciI CCGC 5 cut(s) 32, 44, 65, 168, 486
AclWI GGATC 3 cut(s) 153, 273, 286
AcoI YGGCCR 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 12, 142, 521
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 2 cut(s) 272, 388
AluI AGCT 2 cut(s) 272, 388
Alw21I GWGCWC 1 cut(s) 390
AlwI GGATC 3 cut(s) 153, 273, 286
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 5 cut(s) 3, 20, 400, 477, 523
ApeKI GCWGC 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 6 cut(s) 4, 21, 469, 477, 508, 524
AvaII GGWCC 2 cut(s) 469, 508
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BalI TGGCCA 1 cut(s) 402
BamHI GGATCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 281, 288
BceAI ACGGC 1 cut(s) 449
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 1 cut(s) 460
BfaI CTAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 302
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 3 cut(s) 66, 270, 302
BlsI GCNGC 3 cut(s) 67, 271, 303
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 2 cut(s) 469, 508
BmgT120I GGNCC 6 cut(s) 4, 21, 469, 477, 508, 524
BmiI GGNNCC 5 cut(s) 6, 51, 280, 471, 478
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 403, 465, 472, 473
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 142, 521
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 2 cut(s) 205, 338
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 4 cut(s) 403, 465, 472, 473
BseGI GGATG 2 cut(s) 58, 88
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 3 cut(s) 12, 142, 521
BseMI GCAATG 2 cut(s) 205, 338
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 281, 288
BseYI CCCAGC 1 cut(s) 437
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 5 cut(s) 5, 22, 402, 479, 525
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 3 cut(s) 62, 120, 515
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 3 cut(s) 12, 142, 521
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 5 cut(s) 5, 22, 402, 479, 525
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 145, 278
Bsp19I CCATGG 1 cut(s) 403
BspACI CCGC 5 cut(s) 32, 44, 65, 168, 486
BspANI GGCC 5 cut(s) 5, 22, 402, 479, 525
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 5 cut(s) 6, 51, 280, 471, 478
BspPI GGATC 3 cut(s) 153, 273, 286
BspQI GCTCTTC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 205, 338
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 403, 465, 472, 473
BssMI GATC 2 cut(s) 145, 278
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 310, 320, 508
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 2 cut(s) 403, 465
BstF5I GGATG 2 cut(s) 58, 88
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 148, 281
BstMBI GATC 2 cut(s) 145, 278
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 167, 340, 385
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 281, 288
BstX2I RGATCY 2 cut(s) 145, 278
BstYI RGATCY 2 cut(s) 145, 278
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 5 cut(s) 5, 22, 402, 479, 525
BtgI CCRYGG 2 cut(s) 403, 465
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 58, 88
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 6 cut(s) 4, 21, 469, 477, 508, 524
CseI GACGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 324
CviAII CATG 1 cut(s) 404
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 147, 280
DpnII GATC 2 cut(s) 145, 278
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 469, 508
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 407
FaiI YATR 4 cut(s) 251, 294, 296, 405
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 403
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 3 cut(s) 66, 270, 302
FokI GGATG 2 cut(s) 45, 75
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 66, 270, 302
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 66, 270, 302
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 5 cut(s) 5, 22, 402, 479, 525
HapII CCGG 3 cut(s) 62, 120, 515
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 407
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 1 cut(s) 235
HpaII CCGG 3 cut(s) 62, 120, 515
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 3 cut(s) 156, 234, 454
Hpy188III TCNNGA 2 cut(s) 239, 413
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 63, 521
HpyCH4III ACNGT 3 cut(s) 310, 320, 508
HpyCH4V TGCA 3 cut(s) 128, 249, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 340, 385
HpyF3I CTNAG 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 407
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 2 cut(s) 145, 278
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 55, 195
Lsp1109I GCAGC 2 cut(s) 281, 288
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 107, 502
MalI GATC 2 cut(s) 147, 280
MboI GATC 2 cut(s) 145, 278
MboII GAAGA 4 cut(s) 62, 65, 90, 93
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 2 cut(s) 145, 278
MhlI GDGCHC 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 2 cut(s) 115, 394
MluNI TGGCCA 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 6 cut(s) 40, 102, 146, 193, 359, 373
Mox20I TGGCCA 1 cut(s) 402
MscI TGGCCA 1 cut(s) 402
MseI TTAA 1 cut(s) 529
Msp20I TGGCCA 1 cut(s) 402
MspI CCGG 3 cut(s) 62, 120, 515
MspR9I CCNGG 1 cut(s) 474
MunI CAATTG 1 cut(s) 394
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 167, 340, 385
NcoI CCATGG 1 cut(s) 403
NdeII GATC 2 cut(s) 145, 278
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 5 cut(s) 6, 51, 280, 471, 478
NmuCI GTSAC 1 cut(s) 502
PasI CCCWGGG 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 67, 271, 303
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 5 cut(s) 6, 51, 280, 471, 478
PspPI GGNCC 6 cut(s) 4, 21, 469, 477, 508, 524
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 145, 278
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 529
SatI GCNGC 3 cut(s) 66, 270, 302
Sau3AI GATC 2 cut(s) 145, 278
Sau96I GGNCC 6 cut(s) 4, 21, 469, 477, 508, 524
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 390
SetI ASST 7 cut(s) 185, 259, 274, 329, 351, 390, 498
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 2 cut(s) 469, 508
Sse9I AATT 2 cut(s) 115, 394
SsiI CCGC 5 cut(s) 32, 44, 65, 168, 486
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 3 cut(s) 310, 320, 508
TaqI TCGA 3 cut(s) 365, 384, 426
TasI AATT 2 cut(s) 115, 394
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 529
Tru9I TTAA 1 cut(s) 529
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 2 cut(s) 269, 301
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 2 cut(s) 65, 252
TspGWI ACGGA 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 469, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.