FvH4_6g03530

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000368
Physical Location & Seq
Forward (+)
1941209 .. 1945423
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03530.t3

Sequence Viewer

Length: 1173 bp
ATGTCAATAACTGCTTCCTTACTCCAACCCACCCCACTCAAATGGCACCACCACCCTCTCCTCTTCTCCCCTTCCCGCCCTCCTCCTCTCCCGCCCAAATCACTCCACCTCATCACCCCCACCTCTCGCTTCAAACTCAACTGCTTCTTCTCACCGGAATCCAAACCGGAGCTCACAACAAAACCTAACCCAATAGAAGTCATCGCGGATAAATTATTAAATGCTGTCAAGGCGCTGAGCAAGCCCGCAATGGTGGCGGTGCTATTGGGCCTGGTACTGATGTCCGACCCGAACCCGGCTTTGGCAGCCTCGGGCGGTCGGGTCGGGGGAAAGTCGTTCTCGTCGCGGTCGAGTTCGTCCAGTTCGTCGTCATCGGCGAGGAGTTACTCGGTGCCGAGGACGTCGAGGCCGGACTTCTCGTACTCGGCGCCGTACTACGCGCCGTCGCCGTTCGGGTTTGGTGGCGGTGGAGGCGGGTTTTATGTGGGCCCGGCGGTGGGAGTCGGAGTCGGGGCGGGGTCGAGTTTCTTTCTGATTCTGACGGGTTTCGCGGCGTTTGTTTTGGTTTCGGGTTTTCTTTCGGATCGGTCTGAGGGGAGTGTGCTTACTGCTACTGAGAAAACTACTGTTCTGAAGTTGCAGGTTGGGTTGTTGGGATTGGGGCGAGAACTACAGAGGGATCTTGATCGGATTGCTGATACGGCAGATACTTCTACCCCTGAGGGTTTGAGCTATGTTATGACAGAGACTACACTTGCTTTGCTTAGGCATCCTGATTATTGCATCTCTGGGTATTCATCGGTGTCTCTGAAACGAAGCATAGAGGATGCAGAGAAAGGCTTCAATCAACTTTCTATTGAAGAAAGGGGTAAATTTGATGAAGAGACACTTGTAAATGTGAACAGCATAAGAAAGCGGAGCTCAACAAGCCAGAGATCTAATGGATTCCGCAATGAATACATAGTGATAACAATATTGGTGGCTGCTGAAGGAGTGCACAAGTTACCTGCAATCAATGGCAGTGGCGACTTGAAGGAAGCACTGCAGAAGCTTGCATCCATTCCCCCAAGCAAATTATTAGCAGTAGAGGTGTTGTGGACTCCTCAGAATGAAAATGACACTCTATCTGAGCGTGAACTACTTGAAGATTACCCACTTCTGAGGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

391

Amino Acids

41.85

Weight (kDa)

8.69

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 404
Acc36I ACCTGC 2 cut(s) 631, 1015
AccB1I GGYRCC 3 cut(s) 45, 391, 427
AccII CGCG 4 cut(s) 206, 346, 440, 551
AclWI GGATC 2 cut(s) 591, 687
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 2 cut(s) 653, 1008
AcyI GRCGYC 2 cut(s) 401, 428
AfaI GTAC 3 cut(s) 276, 422, 434
AfiI CCNNNNNNNGG 4 cut(s) 295, 301, 496, 497
AgsI TTSAA 5 cut(s) 133, 844, 860, 1033, 1145
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 4 cut(s) 172, 732, 921, 1051
AluI AGCT 4 cut(s) 172, 732, 921, 1051
Alw21I GWGCWC 3 cut(s) 174, 923, 999
Alw26I GTCTC 3 cut(s) 740, 810, 878
Alw44I GTGCAC 1 cut(s) 995
AlwI GGATC 2 cut(s) 591, 687
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 4 cut(s) 268, 407, 487, 1163
ApaI GGGCCC 1 cut(s) 491
ApaLI GTGCAC 1 cut(s) 995
ApeKI GCWGC 2 cut(s) 305, 983
ApoI RAATTY 1 cut(s) 872
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 3 cut(s) 235, 430, 442
AspS9I GGNCC 3 cut(s) 268, 487, 488
AsuC2I CCSGG 2 cut(s) 296, 491
AsuHPI GGTGA 2 cut(s) 106, 144
AvaI CYCGRG 1 cut(s) 310
AxyI CCTNAGG 1 cut(s) 720
BaeGI GKGCMC 2 cut(s) 491, 999
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BanI GGYRCC 3 cut(s) 45, 391, 427
BanII GRGCYC 3 cut(s) 174, 491, 923
Bbv12I GWGCWC 3 cut(s) 174, 923, 999
BbvI GCAGC 2 cut(s) 317, 970
BceAI ACGGC 4 cut(s) 415, 427, 433, 717
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 2 cut(s) 296, 491
BcoDI GTCTC 3 cut(s) 740, 810, 878
BfmI CTRYAG 2 cut(s) 671, 1043
BfoI RGCGCY 2 cut(s) 236, 431
BfuAI ACCTGC 2 cut(s) 631, 1015
BglII AGATCT 1 cut(s) 935
BisI GCNGC 3 cut(s) 306, 552, 984
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 3 cut(s) 307, 553, 985
Bme1390I CCNGG 3 cut(s) 272, 296, 491
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 268, 487, 488
BmiI GGNNCC 4 cut(s) 47, 393, 429, 489
BmrFI CCNGG 3 cut(s) 272, 296, 491
BmsI GCATC 4 cut(s) 778, 792, 817, 1064
Bpu10I CCTNAGC 1 cut(s) 764
Bpu1102I GCTNAGC 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 296, 491
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 2 cut(s) 401, 428
BsaJI CCNNGG 2 cut(s) 309, 395
BsaWI WCCGGW 2 cut(s) 154, 166
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 301, 496, 497
Bse1I ACTGG 1 cut(s) 360
Bse21I CCTNAGG 1 cut(s) 720
Bse3DI GCAATG 2 cut(s) 255, 958
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 309, 395
BseGI GGATG 3 cut(s) 769, 832, 1055
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 4 cut(s) 295, 301, 496, 497
BseMI GCAATG 2 cut(s) 255, 958
BseMII CTCAG 7 cut(s) 227, 582, 606, 711, 1118, 1119, 1151
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 5 cut(s) 50, 72, 75, 394, 1092
BseSI GKGCMC 2 cut(s) 491, 999
BseXI GCAGC 2 cut(s) 317, 970
Bsh1236I CGCG 4 cut(s) 206, 346, 440, 551
Bsh1285I CGRYCG 2 cut(s) 319, 350
BshFI GGCC 4 cut(s) 270, 409, 489, 1165
BshNI GGYRCC 3 cut(s) 45, 391, 427
BsiEI CGRYCG 2 cut(s) 319, 350
BsiHKAI GWGCWC 3 cut(s) 174, 923, 999
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 5 cut(s) 155, 167, 296, 410, 491
BslI CCNNNNNNNGG 4 cut(s) 295, 301, 496, 497
BsmAI GTCTC 3 cut(s) 740, 810, 878
BsnI GGCC 4 cut(s) 270, 409, 489, 1165
BsoBI CYCGRG 1 cut(s) 310
Bsp120I GGGCCC 1 cut(s) 487
Bsp1286I GDGCHC 4 cut(s) 174, 491, 923, 999
Bsp143I GATC 4 cut(s) 583, 679, 685, 935
Bsp1720I GCTNAGC 1 cut(s) 236
BspANI GGCC 4 cut(s) 270, 409, 489, 1165
BspCNI CTCAG 7 cut(s) 228, 583, 607, 712, 1117, 1120, 1152
BspFNI CGCG 4 cut(s) 206, 346, 440, 551
BspLI GGNNCC 4 cut(s) 47, 393, 429, 489
BspMAI CTGCAG 1 cut(s) 1047
BspMI ACCTGC 2 cut(s) 631, 1015
BspPI GGATC 2 cut(s) 591, 687
BspT107I GGYRCC 3 cut(s) 45, 391, 427
BsrDI GCAATG 2 cut(s) 255, 958
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 309, 395
BssMI GATC 4 cut(s) 583, 679, 685, 935
BssNI GRCGYC 2 cut(s) 401, 428
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 2 cut(s) 68, 876
BstACI GRCGYC 2 cut(s) 401, 428
BstC8I GCNNGC 3 cut(s) 242, 246, 1053
BstDEI CTNAG 8 cut(s) 236, 591, 615, 720, 764, 1104, 1128, 1160
BstF5I GGATG 3 cut(s) 769, 832, 1055
BstFNI CGCG 4 cut(s) 206, 346, 440, 551
BstH2I RGCGCY 2 cut(s) 236, 431
BstHHI GCGC 3 cut(s) 235, 430, 442
BstKTI GATC 4 cut(s) 586, 682, 688, 938
BstMAI GTCTC 3 cut(s) 740, 810, 878
BstMBI GATC 4 cut(s) 583, 679, 685, 935
BstMCI CGRYCG 2 cut(s) 319, 350
BstMWI GCNNNNNNNGC 7 cut(s) 230, 241, 254, 305, 471, 701, 927
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 270, 294, 489
BstSFI CTRYAG 2 cut(s) 671, 1043
BstSLI GKGCMC 2 cut(s) 491, 999
BstUI CGCG 4 cut(s) 206, 346, 440, 551
BstV1I GCAGC 2 cut(s) 317, 970
BstX2I RGATCY 2 cut(s) 679, 935
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 2 cut(s) 679, 935
Bsu36I CCTNAGG 1 cut(s) 720
BsuRI GGCC 4 cut(s) 270, 409, 489, 1165
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 3 cut(s) 769, 832, 1055
BtsI GCAGTG 2 cut(s) 1027, 1040
BtsIMutI CAGTG 2 cut(s) 1027, 1040
BveI ACCTGC 2 cut(s) 631, 1015
Cac8I GCNNGC 3 cut(s) 242, 246, 1053
CfoI GCGC 3 cut(s) 235, 430, 442
Cfr13I GGNCC 3 cut(s) 268, 487, 488
Csp6I GTAC 3 cut(s) 275, 421, 433
CspCI CAANNNNNGTGG 4 cut(s) 960, 995, 1003, 1038
CviQI GTAC 3 cut(s) 275, 421, 433
DdeI CTNAG 8 cut(s) 236, 591, 615, 720, 764, 1104, 1128, 1160
DinI GGCGCC 1 cut(s) 429
DpnI GATC 4 cut(s) 585, 681, 687, 937
DpnII GATC 4 cut(s) 583, 679, 685, 935
Eam1104I CTCTTC 2 cut(s) 68, 876
EarI CTCTTC 2 cut(s) 68, 876
Ecl136II GAGCTC 2 cut(s) 172, 921
Eco147I AGGCCT 1 cut(s) 1165
Eco24I GRGCYC 3 cut(s) 174, 491, 923
Eco53kI GAGCTC 2 cut(s) 172, 921
Eco57I CTGAAG 2 cut(s) 653, 1008
Eco81I CCTNAGG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 310
EcoICRI GAGCTC 2 cut(s) 172, 921
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 3 cut(s) 174, 491, 923
EgeI GGCGCC 1 cut(s) 429
EheI GGCGCC 1 cut(s) 429
FaiI YATR 7 cut(s) 483, 735, 740, 821, 908, 962, 1171
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FauI CCCGC 5 cut(s) 83, 99, 253, 467, 508
Fnu4HI GCNGC 3 cut(s) 306, 552, 984
FokI GGATG 3 cut(s) 756, 839, 1042
FriOI GRGCYC 3 cut(s) 174, 491, 923
Fsp4HI GCNGC 3 cut(s) 306, 552, 984
GlaI GCGC 3 cut(s) 234, 429, 441
GluI GCNGC 3 cut(s) 306, 552, 984
HaeII RGCGCY 2 cut(s) 236, 431
HaeIII GGCC 4 cut(s) 270, 409, 489, 1165
HapII CCGG 5 cut(s) 155, 167, 296, 410, 491
HhaI GCGC 3 cut(s) 235, 430, 442
Hin1I GRCGYC 2 cut(s) 401, 428
Hin6I GCGC 3 cut(s) 233, 428, 440
HinP1I GCGC 3 cut(s) 233, 428, 440
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 6 cut(s) 158, 501, 507, 535, 945, 1099
HpaII CCGG 5 cut(s) 155, 167, 296, 410, 491
HphI GGTGA 2 cut(s) 106, 144
Hpy166II GTNNAC 4 cut(s) 901, 997, 1098, 1136
Hpy188III TCNNGA 2 cut(s) 683, 773
Hpy8I GTNNAC 4 cut(s) 901, 997, 1098, 1136
Hpy99I CGWCG 4 cut(s) 346, 370, 406, 448
HpyAV CCTTC 3 cut(s) 81, 983, 1027
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 7 cut(s) 640, 783, 830, 997, 1010, 1045, 1055
HpyF10VI GCNNNNNNNGC 7 cut(s) 230, 241, 254, 305, 471, 701, 927
HpyF3I CTNAG 8 cut(s) 236, 591, 615, 720, 764, 1104, 1128, 1160
HpySE526I ACGT 1 cut(s) 401
Hsp92I GRCGYC 2 cut(s) 401, 428
HspAI GCGC 3 cut(s) 233, 428, 440
KasI GGCGCC 1 cut(s) 427
Kzo9I GATC 4 cut(s) 583, 679, 685, 935
LmnI GCTCC 2 cut(s) 169, 918
Lsp1109I GCAGC 2 cut(s) 317, 970
LweI GCATC 4 cut(s) 778, 792, 817, 1064
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 2 cut(s) 383, 1002
MalI GATC 4 cut(s) 585, 681, 687, 937
MboI GATC 4 cut(s) 583, 679, 685, 935
MboII GAAGA 5 cut(s) 55, 139, 872, 893, 1157
MflI RGATCY 2 cut(s) 679, 935
MhlI GDGCHC 4 cut(s) 174, 491, 923, 999
MluCI AATT 3 cut(s) 212, 872, 1073
Mly113I GGCGCC 1 cut(s) 428
MlyI GAGTC 3 cut(s) 510, 516, 1093
MmeI TCCRAC 3 cut(s) 49, 309, 484
MroXI GAANNNNTTC 1 cut(s) 839
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 40
MspI CCGG 5 cut(s) 155, 167, 296, 410, 491
MspR9I CCNGG 3 cut(s) 272, 296, 491
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 4 cut(s) 206, 346, 440, 551
MwoI GCNNNNNNNGC 7 cut(s) 230, 241, 254, 305, 471, 701, 927
NarI GGCGCC 1 cut(s) 428
NciI CCSGG 2 cut(s) 296, 491
NdeII GATC 4 cut(s) 583, 679, 685, 935
NlaIV GGNNCC 4 cut(s) 47, 393, 429, 489
NmeAIII GCCGAG 2 cut(s) 404, 420
PceI AGGCCT 1 cut(s) 1165
PcsI WCGNNNNNNNCGW 3 cut(s) 347, 362, 374
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 3 cut(s) 158, 535, 945
PkrI GCNGC 3 cut(s) 307, 553, 985
PleI GAGTC 3 cut(s) 509, 515, 1093
PluTI GGCGCC 1 cut(s) 431
PpsI GAGTC 3 cut(s) 509, 515, 1093
Psp124BI GAGCTC 2 cut(s) 174, 923
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 4 cut(s) 47, 393, 429, 489
PspOMI GGGCCC 1 cut(s) 487
PspPI GGNCC 3 cut(s) 268, 487, 488
PstI CTGCAG 1 cut(s) 1047
PsuI RGATCY 2 cut(s) 679, 935
RsaI GTAC 3 cut(s) 276, 422, 434
RsaNI GTAC 3 cut(s) 275, 421, 433
RseI CAYNNNNRTG 1 cut(s) 40
SacI GAGCTC 2 cut(s) 174, 923
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 3 cut(s) 306, 552, 984
Sau3AI GATC 4 cut(s) 583, 679, 685, 935
Sau96I GGNCC 3 cut(s) 268, 487, 488
SchI GAGTC 3 cut(s) 510, 516, 1093
ScrFI CCNGG 3 cut(s) 272, 296, 491
SduI GDGCHC 4 cut(s) 174, 491, 923, 999
SfaNI GCATC 4 cut(s) 778, 792, 817, 1064
SfcI CTRYAG 2 cut(s) 671, 1043
SfoI GGCGCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 3 cut(s) 212, 872, 1073
SseBI AGGCCT 1 cut(s) 1165
SspDI GGCGCC 1 cut(s) 427
SspI AATATT 1 cut(s) 975
SstI GAGCTC 2 cut(s) 174, 923
StuI AGGCCT 1 cut(s) 1165
StyD4I CCNGG 3 cut(s) 270, 294, 489
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 404
TaqI TCGA 3 cut(s) 350, 404, 521
TaqII GACCGA 1 cut(s) 576
TasI AATT 3 cut(s) 212, 872, 1073
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 3 cut(s) 158, 535, 945
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 2 cut(s) 1027, 1047
TseI GCWGC 2 cut(s) 305, 983
TspDTI ATGAA 4 cut(s) 786, 894, 969, 1125
TspRI CASTG 2 cut(s) 1027, 1047
VneI GTGCAC 1 cut(s) 995
XapI RAATTY 1 cut(s) 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 839
ZraI GACGTC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.