FvH4_5g20770
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000416
Physical Location & Seq
Forward (+)
12338882 .. 12344076
5195 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20770.t4

Sequence Viewer

Length: 1161 bp
ATGAAGTGCTTCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAATCGGAGTCAGCTCCGGATTTGAGGAAGAATAGCGACTCCTTGGCTCCTGTATTAGACCGTGCCGCGAAATCTCTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTGACAGTTTTCCCATTCCAAGAGCTCAGGGATTCAACAAATGGCTTCAGCAGATTGCAGAAGCTTGGTGAAGGAGGCTTTGGGAGTGTGTATAAAGGAATGATCAAGCCCAAAAATGGAAAGGGTAGTGCAATTTTGGTTGCCATCAAAAAGTTGAATCCTCATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTGTATGAATATATGCCTAATAGGAGTTTAGAAGATCATCTTTTCAATAGGGCATTGAAGCCTCTTCCTTGGATAACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGAACTTTAAGCCGAAGCTGTCAGACTTTGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCGGTGGTAGGGACTTATGGATATGCTGCCCCGGAATATGTCGAAACAGGCCATCTTTCCATTCATAGTGACCTATGGAGTTTTGGTGTGGTGCTGTATGAGATCATCACTGGGAGGCGTGTGTTAGAAAGAAACCGACCAACAGCAGAGCAGAAGCTTCTTCATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGGTAATAGATCCACTCCTGAGAGATCAGTATTCTTTTGATGCAGCTCAGAAAATCGCCAAGTTGGCAGATAGTTGCCTGAACAAGAATCCAAAAGACCGGCCAACGATGATTCAGGTAGTAGAGATCTTAAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAGTTTTGGGGCATCTGGGTCTAGATTGGGTAAAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

387

Amino Acids

43.44

Weight (kDa)

9.59

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 104 - 264 4.8e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 112 - 266 5e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1088
AccII CGCG 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 2 cut(s) 108, 725
AclWI GGATC 3 cut(s) 439, 452, 932
AcoI YGGCCR 1 cut(s) 1028
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 4 cut(s) 149, 709, 902, 1090
AfiI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
AgsI TTSAA 7 cut(s) 22, 204, 325, 371, 505, 517, 622
AhdI GACNNNNNGTC 1 cut(s) 596
AjnI CCWGG 1 cut(s) 600
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 9 cut(s) 56, 193, 232, 336, 409, 664, 880, 974, 1067
AluI AGCT 9 cut(s) 56, 193, 232, 336, 409, 664, 880, 974, 1067
Alw21I GWGCWC 2 cut(s) 195, 639
AlwI GGATC 3 cut(s) 439, 452, 932
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 3 cut(s) 692, 772, 1028
ApeKI GCWGC 3 cut(s) 560, 749, 971
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 1088
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 5 cut(s) 117, 248, 383, 616, 713
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BamHI GGATCC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 2 cut(s) 195, 639
BbvI GCAGC 3 cut(s) 547, 736, 983
BccI CCATC 3 cut(s) 320, 425, 783
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 755
BfaI CTAG 3 cut(s) 413, 684, 1128
BfmI CTRYAG 2 cut(s) 426, 906
BglI GCCNNNNNGGC 1 cut(s) 992
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 4 cut(s) 108, 561, 750, 972
BlsI GCNGC 4 cut(s) 109, 562, 751, 973
Bme1390I CCNGG 2 cut(s) 602, 755
BmeRI GACNNNNNGTC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 3 cut(s) 90, 446, 1090
BmrFI CCNGG 2 cut(s) 602, 755
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 2 cut(s) 958, 1127
BmuI ACTGGG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 84, 527, 753
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 400, 1155
Bse118I RCCGGY 1 cut(s) 1026
Bse1I ACTGG 2 cut(s) 597, 838
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 3 cut(s) 84, 527, 753
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
BseMII CTCAG 3 cut(s) 208, 938, 989
BseNI ACTGG 2 cut(s) 597, 838
BseXI GCAGC 3 cut(s) 547, 736, 983
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 694, 774, 1030
BshNI GGYRCC 1 cut(s) 1088
BsiHKAI GWGCWC 2 cut(s) 195, 639
BsiSI CCGG 3 cut(s) 59, 755, 1027
BslFI GGGAC 2 cut(s) 603, 748
BslI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
BsmFI GGGAC 2 cut(s) 603, 748
BsnI GGCC 3 cut(s) 694, 774, 1030
Bsp1286I GDGCHC 2 cut(s) 195, 639
Bsp13I TCCGGA 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
BspACI CCGC 2 cut(s) 108, 725
BspANI GGCC 3 cut(s) 694, 774, 1030
BspCNI CTCAG 3 cut(s) 207, 939, 988
BspEI TCCGGA 1 cut(s) 58
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 90, 446, 1090
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 3 cut(s) 439, 452, 932
BspT107I GGYRCC 1 cut(s) 1088
BsrFI RCCGGY 1 cut(s) 1026
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 2 cut(s) 597, 838
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 3 cut(s) 84, 527, 753
BssMI GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
BssT1I CCWWGG 2 cut(s) 84, 527
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 6 cut(s) 104, 175, 707, 900, 914, 1109
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 360, 681, 1065
BstDEI CTNAG 3 cut(s) 194, 947, 975
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 7 cut(s) 273, 447, 496, 828, 940, 955, 1056
BstMBI GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
BstMWI GCNNNNNNNGC 1 cut(s) 992
BstNI CCWGG 1 cut(s) 602
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 2 cut(s) 600, 753
BstSFI CTRYAG 2 cut(s) 426, 906
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 3 cut(s) 547, 736, 983
BstX2I RGATCY 3 cut(s) 444, 937, 1053
BstYI RGATCY 3 cut(s) 444, 937, 1053
BsuRI GGCC 3 cut(s) 694, 774, 1030
BtsCI GGATG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 3 cut(s) 360, 681, 1065
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 4 cut(s) 148, 708, 901, 1089
CviAII CATG 3 cut(s) 584, 713, 928
CviQI GTAC 4 cut(s) 148, 708, 901, 1089
DdeI CTNAG 3 cut(s) 194, 947, 975
DpnI GATC 7 cut(s) 272, 446, 495, 827, 939, 954, 1055
DpnII GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
DriI GACNNNNNGTC 1 cut(s) 596
EaeI YGGCCR 1 cut(s) 1028
Eam1104I CTCTTC 1 cut(s) 528
Eam1105I GACNNNNNGTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 84, 527
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 84, 527
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 84, 527
FaeI CATG 3 cut(s) 587, 716, 931
FalI AAGNNNNNCTT 5 cut(s) 28, 342, 374, 483, 515
FaqI GGGAC 2 cut(s) 603, 748
FatI CATG 3 cut(s) 583, 712, 927
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 108, 561, 750, 972
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 108, 561, 750, 972
FspBI CTAG 3 cut(s) 413, 684, 1128
GluI GCNGC 4 cut(s) 108, 561, 750, 972
HaeIII GGCC 3 cut(s) 694, 774, 1030
HapII CCGG 3 cut(s) 59, 755, 1027
Hin1II CATG 3 cut(s) 587, 716, 931
HindIII AAGCTT 3 cut(s) 230, 407, 878
HinfI GANTC 8 cut(s) 44, 50, 80, 200, 325, 1015, 1039, 1076
HpaII CCGG 3 cut(s) 59, 755, 1027
HphI GGTGA 5 cut(s) 117, 248, 383, 616, 713
Hpy188I TCNGA 3 cut(s) 49, 670, 978
Hpy188III TCNNGA 4 cut(s) 59, 614, 946, 1128
HpyAV CCTTC 5 cut(s) 28, 132, 151, 233, 683
HpyCH4III ACNGT 6 cut(s) 104, 175, 707, 900, 914, 1109
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 226, 299, 362, 908, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 992
HpyF3I CTNAG 3 cut(s) 194, 947, 975
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 3 cut(s) 587, 716, 931
Kpn2I TCCGGA 1 cut(s) 58
KpnI GGTACC 1 cut(s) 1092
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
LmnI GCTCC 3 cut(s) 61, 94, 160
Lsp1109I GCAGC 3 cut(s) 547, 736, 983
LweI GCATC 2 cut(s) 958, 1127
MaeI CTAG 3 cut(s) 413, 684, 1128
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 540, 701, 791
MalI GATC 7 cut(s) 272, 446, 495, 827, 939, 954, 1055
MboI GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
MboII GAAGA 4 cut(s) 82, 503, 515, 875
MflI RGATCY 3 cut(s) 444, 937, 1053
MhlI GDGCHC 2 cut(s) 195, 639
MluCI AATT 4 cut(s) 143, 166, 300, 371
MlyI GAGTC 2 cut(s) 59, 74
MmeI TCCRAC 2 cut(s) 472, 654
MroI TCCGGA 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 654, 1058
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 3 cut(s) 59, 755, 1027
MspR9I CCNGG 2 cut(s) 602, 755
MvaI CCWGG 1 cut(s) 602
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 992
NciI CCSGG 1 cut(s) 755
NdeII GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
NlaIII CATG 3 cut(s) 587, 716, 931
NlaIV GGNNCC 3 cut(s) 90, 446, 1090
NmuCI GTSAC 2 cut(s) 701, 791
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 6 cut(s) 44, 200, 325, 1015, 1039, 1076
PkrI GCNGC 4 cut(s) 109, 562, 751, 973
PleI GAGTC 2 cut(s) 58, 74
PpsI GAGTC 2 cut(s) 58, 74
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 3 cut(s) 90, 446, 1090
PspPI GGNCC 1 cut(s) 692
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 3 cut(s) 444, 937, 1053
RsaI GTAC 4 cut(s) 149, 709, 902, 1090
RsaNI GTAC 4 cut(s) 148, 708, 901, 1089
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 654, 1058
SatI GCNGC 4 cut(s) 108, 561, 750, 972
Sau3AI GATC 7 cut(s) 270, 444, 493, 825, 937, 952, 1053
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 2 cut(s) 59, 74
ScrFI CCNGG 2 cut(s) 602, 755
SduI GDGCHC 2 cut(s) 195, 639
SfaNI GCATC 2 cut(s) 958, 1127
SfcI CTRYAG 2 cut(s) 426, 906
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 4 cut(s) 143, 166, 300, 371
SsiI CCGC 2 cut(s) 108, 725
SspMI CTAG 3 cut(s) 413, 684, 1128
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 600, 753
StyI CCWWGG 2 cut(s) 84, 527
TaaI ACNGT 6 cut(s) 104, 175, 707, 900, 914, 1109
TaiI ACGT 1 cut(s) 636
TaqI TCGA 3 cut(s) 613, 719, 765
TasI AATT 4 cut(s) 143, 166, 300, 371
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 6 cut(s) 44, 200, 325, 1015, 1039, 1076
Tru1I TTAA 2 cut(s) 654, 1058
Tru9I TTAA 2 cut(s) 654, 1058
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 701, 791
TseI GCWGC 3 cut(s) 560, 749, 971
Tsp45I GTSAC 2 cut(s) 701, 791
TspDTI ATGAA 4 cut(s) 17, 480, 776, 875
TspRI CASTG 1 cut(s) 838
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 413, 684, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.