RchiOBHm_Chr7g0206811
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24350969 .. 24351286
318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18510

Sequence Viewer

Length: 318 bp
ATGGAGTTTTGGTGTGGTGCTATAGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAGAAGTTCAGCATGATAATAGATCTGCTCCTGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATCGCCAAGCTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCGGGTAGTAGAGATATTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

9.69

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 2 cut(s) 62, 230
AfaI GTAC 2 cut(s) 104, 292
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 5 cut(s) 82, 176, 193, 204, 269
AluI AGCT 5 cut(s) 82, 176, 193, 204, 269
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 22
AoxI GGCC 2 cut(s) 62, 230
ApeKI GCWGC 2 cut(s) 173, 204
AseI ATTAAT 1 cut(s) 168
Asp718I GGTACC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 185, 191
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 2 cut(s) 21, 108
BglI GCCNNNNNGGC 1 cut(s) 194
BglII AGATCT 1 cut(s) 139
BisI GCNGC 2 cut(s) 174, 205
BlsI GCNGC 2 cut(s) 175, 206
BmiI GGNNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 147
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse118I RCCGGY 2 cut(s) 60, 228
Bse1I ACTGG 2 cut(s) 40, 157
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 40, 157
BseXI GCAGC 2 cut(s) 185, 191
BshFI GGCC 2 cut(s) 64, 232
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 61, 229
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 64, 232
Bso31I GGTCTC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 27, 139
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 64, 232
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 147
BsrFI RCCGGY 2 cut(s) 60, 228
BsrI ACTGG 2 cut(s) 40, 157
BssAI RCCGGY 2 cut(s) 60, 228
BssMI GATC 2 cut(s) 27, 139
Bst4CI ACNGT 2 cut(s) 102, 116
BstC8I GCNNGC 2 cut(s) 195, 267
BstDEI CTNAG 2 cut(s) 49, 149
BstKTI GATC 2 cut(s) 30, 142
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 27, 139
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 2 cut(s) 21, 108
BstV1I GCAGC 2 cut(s) 185, 191
BstX2I RGATCY 2 cut(s) 27, 139
BstYI RGATCY 2 cut(s) 27, 139
BsuRI GGCC 2 cut(s) 64, 232
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 195, 267
Cfr10I RCCGGY 2 cut(s) 60, 228
Csp6I GTAC 2 cut(s) 103, 291
CviAII CATG 1 cut(s) 130
CviJI RGCY 7 cut(s) 64, 82, 176, 193, 204, 232, 269
CviKI_1 RGCY 7 cut(s) 64, 82, 176, 193, 204, 232, 269
CviQI GTAC 2 cut(s) 103, 291
DdeI CTNAG 2 cut(s) 49, 149
DpnI GATC 2 cut(s) 29, 141
DpnII GATC 2 cut(s) 27, 139
EaeI YGGCCR 2 cut(s) 62, 230
Eco31I GGTCTC 1 cut(s) 147
FaeI CATG 1 cut(s) 133
FaiI YATR 3 cut(s) 23, 131, 272
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 174, 205
Fsp4HI GCNGC 2 cut(s) 174, 205
GluI GCNGC 2 cut(s) 174, 205
HaeIII GGCC 2 cut(s) 64, 232
HapII CCGG 2 cut(s) 61, 229
Hin1II CATG 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 241, 278
HpaII CCGG 2 cut(s) 61, 229
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 102, 116
HpyCH4V TGCA 3 cut(s) 110, 173, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 49, 149
Hsp92II CATG 1 cut(s) 133
KpnI GGTACC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 27, 139
LmnI GCTCC 2 cut(s) 73, 150
LpnPI CCDG 8 cut(s) 21, 74, 120, 161, 170, 179, 221, 242
Lsp1109I GCAGC 2 cut(s) 185, 191
MalI GATC 2 cut(s) 29, 141
MboI GATC 2 cut(s) 27, 139
MflI RGATCY 2 cut(s) 27, 139
MluCI AATT 1 cut(s) 310
MnlI CCTC 2 cut(s) 33, 41
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 61, 229
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 2 cut(s) 27, 139
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 292
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 241, 278
PkrI GCNGC 2 cut(s) 175, 206
PshBI ATTAAT 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 292
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 27, 139
RsaI GTAC 2 cut(s) 104, 292
RsaNI GTAC 2 cut(s) 103, 291
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 174, 205
Sau3AI GATC 2 cut(s) 27, 139
SetI ASST 5 cut(s) 84, 178, 195, 206, 271
SfcI CTRYAG 2 cut(s) 21, 108
Sse9I AATT 1 cut(s) 310
SsiI CCGC 1 cut(s) 71
TaaI ACNGT 2 cut(s) 102, 116
TasI AATT 1 cut(s) 310
TfiI GAWTC 2 cut(s) 241, 278
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 173, 204
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 40
VspI ATTAAT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.