Rh7CG244800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000416
Physical Location & Seq
Forward (+)
22915125 .. 22952844
37720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG244800.1

Sequence Viewer

Length: 1161 bp
ATGAAGTGTTTCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAGTCAAAATCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTGACTCCGGTATTAGACCGTGCCTCGAAATCTTTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGGGAAGGGGGATTTGGGAGTGTGTATAAAGGAGTAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATTTTGGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGTCTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCGTCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTGGAAAGACACCGGCCAACAGTGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTGGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

386

Amino Acids

43.49

Weight (kDa)

9.68

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 351 9.1e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 353 5.1e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
Acc65I GGTACC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1088
AccIII TCCGGA 1 cut(s) 58
AclWI GGATC 6 cut(s) 439, 452, 501, 539, 820, 932
AcoI YGGCCR 2 cut(s) 860, 1028
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 4 cut(s) 149, 709, 902, 1090
AfiI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
AgsI TTSAA 9 cut(s) 22, 172, 204, 325, 371, 505, 517, 622, 1060
AjnI CCWGG 1 cut(s) 600
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
Alw21I GWGCWC 2 cut(s) 195, 639
Alw26I GTCTC 1 cut(s) 945
AlwI GGATC 6 cut(s) 439, 452, 501, 539, 820, 932
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 4 cut(s) 692, 772, 860, 1028
ApeKI GCWGC 4 cut(s) 560, 749, 971, 1002
ApoI RAATTY 1 cut(s) 166
AseI ATTAAT 1 cut(s) 966
Asp700I GAANNNNTTC 2 cut(s) 8, 176
Asp718I GGTACC 1 cut(s) 1088
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 4 cut(s) 117, 383, 616, 713
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BamHI GGATCC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 2 cut(s) 535, 584
Bbv12I GWGCWC 2 cut(s) 195, 639
BbvI GCAGC 4 cut(s) 547, 736, 983, 989
BccI CCATC 2 cut(s) 425, 783
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 602
BcoDI GTCTC 1 cut(s) 945
BfaI CTAG 2 cut(s) 413, 684
BfmI CTRYAG 2 cut(s) 426, 906
BfuAI ACCTGC 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 992
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 4 cut(s) 561, 750, 972, 1003
BlsI GCNGC 4 cut(s) 562, 751, 973, 1004
Bme1390I CCNGG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 446, 1090
BmrFI CCNGG 1 cut(s) 602
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 1 cut(s) 1127
BmuI ACTGGG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 2 cut(s) 58, 91
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 400, 1155
Bse118I RCCGGY 2 cut(s) 858, 1026
Bse1I ACTGG 2 cut(s) 838, 955
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
BseMII CTCAG 2 cut(s) 208, 681
BseNI ACTGG 2 cut(s) 838, 955
BseXI GCAGC 4 cut(s) 547, 736, 983, 989
BshFI GGCC 4 cut(s) 694, 774, 862, 1030
BshNI GGYRCC 1 cut(s) 1088
BsiHKAI GWGCWC 2 cut(s) 195, 639
BsiSI CCGG 4 cut(s) 59, 92, 859, 1027
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
BsmAI GTCTC 1 cut(s) 945
BsmFI GGGAC 1 cut(s) 748
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 4 cut(s) 694, 774, 862, 1030
Bso31I GGTCTC 1 cut(s) 945
Bsp1286I GDGCHC 2 cut(s) 195, 639
Bsp13I TCCGGA 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BspANI GGCC 4 cut(s) 694, 774, 862, 1030
BspCNI CTCAG 2 cut(s) 207, 680
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 446, 1090
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 6 cut(s) 439, 452, 501, 539, 820, 932
BspT107I GGYRCC 1 cut(s) 1088
BspTNI GGTCTC 1 cut(s) 945
BsrFI RCCGGY 2 cut(s) 858, 1026
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 2 cut(s) 838, 955
BssAI RCCGGY 2 cut(s) 858, 1026
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BssSI CACGAG 2 cut(s) 535, 584
BssT1I CCWWGG 1 cut(s) 527
Bst2BI CACGAG 2 cut(s) 535, 584
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 5 cut(s) 104, 707, 868, 900, 914
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 360, 681, 1065
BstDEI CTNAG 4 cut(s) 194, 487, 667, 947
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 1 cut(s) 649
BstKTI GATC 6 cut(s) 447, 496, 534, 828, 940, 1056
BstMAI GTCTC 1 cut(s) 945
BstMBI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BstMWI GCNNNNNNNGC 1 cut(s) 992
BstNI CCWGG 1 cut(s) 602
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 426, 906
BstV1I GCAGC 4 cut(s) 547, 736, 983, 989
BstX2I RGATCY 4 cut(s) 444, 825, 937, 1053
BstYI RGATCY 4 cut(s) 444, 825, 937, 1053
BsuRI GGCC 4 cut(s) 694, 774, 862, 1030
BtsCI GGATG 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 3 cut(s) 732, 831, 873
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 360, 681, 1065
Cfr10I RCCGGY 2 cut(s) 858, 1026
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 4 cut(s) 148, 708, 901, 1089
CviAII CATG 2 cut(s) 713, 928
CviQI GTAC 4 cut(s) 148, 708, 901, 1089
DdeI CTNAG 4 cut(s) 194, 487, 667, 947
DpnI GATC 6 cut(s) 446, 495, 533, 827, 939, 1055
DpnII GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
EaeI YGGCCR 2 cut(s) 860, 1028
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 2 cut(s) 716, 931
FalI AAGNNNNNCTT 3 cut(s) 28, 342, 374
FaqI GGGAC 1 cut(s) 748
FatI CATG 2 cut(s) 712, 927
Fnu4HI GCNGC 4 cut(s) 561, 750, 972, 1003
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 561, 750, 972, 1003
FspBI CTAG 2 cut(s) 413, 684
GluI GCNGC 4 cut(s) 561, 750, 972, 1003
HaeIII GGCC 4 cut(s) 694, 774, 862, 1030
HapII CCGG 4 cut(s) 59, 92, 859, 1027
Hin1II CATG 2 cut(s) 716, 931
HindIII AAGCTT 3 cut(s) 230, 407, 878
HinfI GANTC 7 cut(s) 44, 80, 88, 200, 325, 1039, 1076
HpaII CCGG 4 cut(s) 59, 92, 859, 1027
HphI GGTGA 4 cut(s) 117, 383, 616, 713
Hpy188I TCNGA 2 cut(s) 670, 978
Hpy188III TCNNGA 5 cut(s) 59, 535, 593, 614, 1057
HpyAV CCTTC 6 cut(s) 28, 132, 151, 166, 233, 683
HpyCH4III ACNGT 5 cut(s) 104, 707, 868, 900, 914
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 226, 362, 908, 971, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 992
HpyF3I CTNAG 4 cut(s) 194, 487, 667, 947
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 2 cut(s) 716, 931
Kpn2I TCCGGA 1 cut(s) 58
KpnI GGTACC 1 cut(s) 1092
Kzo9I GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
LmnI GCTCC 4 cut(s) 61, 160, 483, 871
Lsp1109I GCAGC 4 cut(s) 547, 736, 983, 989
LweI GCATC 1 cut(s) 1127
MaeI CTAG 2 cut(s) 413, 684
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 540, 701, 791
MalI GATC 6 cut(s) 446, 495, 533, 827, 939, 1055
MboI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
MboII GAAGA 1 cut(s) 515
MflI RGATCY 4 cut(s) 444, 825, 937, 1053
MhlI GDGCHC 2 cut(s) 195, 639
MluCI AATT 7 cut(s) 143, 166, 300, 371, 981, 1108, 1130
MlyI GAGTC 3 cut(s) 53, 74, 82
MmeI TCCRAC 2 cut(s) 472, 654
MroI TCCGGA 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 8, 176
MseI TTAA 2 cut(s) 654, 966
MspI CCGG 4 cut(s) 59, 92, 859, 1027
MspR9I CCNGG 1 cut(s) 602
Mva1269I GAATGC 1 cut(s) 1021
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 1 cut(s) 992
NdeII GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
NlaIII CATG 2 cut(s) 716, 931
NlaIV GGNNCC 2 cut(s) 446, 1090
NmuCI GTSAC 2 cut(s) 701, 791
PctI GAATGC 1 cut(s) 1021
PdmI GAANNNNTTC 2 cut(s) 8, 176
PfeI GAWTC 4 cut(s) 200, 325, 1039, 1076
PkrI GCNGC 4 cut(s) 562, 751, 973, 1004
PleI GAGTC 3 cut(s) 52, 74, 82
PpsI GAGTC 3 cut(s) 52, 74, 82
PshBI ATTAAT 1 cut(s) 966
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 446, 1090
PspPI GGNCC 1 cut(s) 692
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 4 cut(s) 444, 825, 937, 1053
RsaI GTAC 4 cut(s) 149, 709, 902, 1090
RsaNI GTAC 4 cut(s) 148, 708, 901, 1089
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 654, 966
SatI GCNGC 4 cut(s) 561, 750, 972, 1003
Sau3AI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 3 cut(s) 53, 74, 82
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 2 cut(s) 195, 639
SfaNI GCATC 1 cut(s) 1127
SfcI CTRYAG 2 cut(s) 426, 906
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 7 cut(s) 143, 166, 300, 371, 981, 1108, 1130
SspMI CTAG 2 cut(s) 413, 684
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 5 cut(s) 104, 707, 868, 900, 914
TaiI ACGT 1 cut(s) 636
TaqI TCGA 4 cut(s) 110, 613, 719, 765
TasI AATT 7 cut(s) 143, 166, 300, 371, 981, 1108, 1130
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 4 cut(s) 200, 325, 1039, 1076
Tru1I TTAA 2 cut(s) 654, 966
Tru9I TTAA 2 cut(s) 654, 966
TscAI CASTG 3 cut(s) 732, 838, 873
TseFI GTSAC 2 cut(s) 701, 791
TseI GCWGC 4 cut(s) 560, 749, 971, 1002
Tsp45I GTSAC 2 cut(s) 701, 791
TspDTI ATGAA 3 cut(s) 17, 480, 1052
TspGWI ACGGA 1 cut(s) 772
TspRI CASTG 3 cut(s) 732, 838, 873
VspI ATTAAT 1 cut(s) 966
XapI RAATTY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmnI GAANNNNTTC 2 cut(s) 8, 176
XspI CTAG 2 cut(s) 413, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.