RchiOBHm_Chr7g0207121
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24546721 .. 24547578
858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18536

Sequence Viewer

Length: 405 bp
ATGTATCGACAGCAGACAATTGGGACTCATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTATATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAGAAGTTCAGCATGATAATAGATCTGCTCCTGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATCGCCAAGCTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCGGGTAGTAGAGATATTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.48

Weight (kDa)

9.52

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 114 6.2e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 116 1e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 2 cut(s) 149, 317
AfaI GTAC 2 cut(s) 191, 379
AgsI TTSAA 2 cut(s) 56, 349
AluBI AGCT 5 cut(s) 169, 263, 280, 291, 356
AluI AGCT 5 cut(s) 169, 263, 280, 291, 356
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 109
AoxI GGCC 3 cut(s) 61, 149, 317
ApeKI GCWGC 3 cut(s) 38, 260, 291
AseI ATTAAT 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 377
BbvI GCAGC 3 cut(s) 25, 272, 278
BccI CCATC 2 cut(s) 72, 80
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 226
BisI GCNGC 3 cut(s) 39, 261, 292
BlsI GCNGC 3 cut(s) 40, 262, 293
BmiI GGNNCC 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse118I RCCGGY 2 cut(s) 147, 315
Bse1I ACTGG 2 cut(s) 127, 244
BseGI GGATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 127, 244
BseXI GCAGC 3 cut(s) 25, 272, 278
BshFI GGCC 3 cut(s) 63, 151, 319
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 2 cut(s) 148, 316
BslFI GGGAC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 63, 151, 319
Bso31I GGTCTC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 114, 226
BspACI CCGC 1 cut(s) 158
BspANI GGCC 3 cut(s) 63, 151, 319
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 147, 315
BsrI ACTGG 2 cut(s) 127, 244
BssAI RCCGGY 2 cut(s) 147, 315
BssMI GATC 2 cut(s) 114, 226
Bst4CI ACNGT 2 cut(s) 189, 203
BstC8I GCNNGC 2 cut(s) 282, 354
BstDEI CTNAG 2 cut(s) 136, 236
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 117, 229
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 114, 226
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 25, 272, 278
BstX2I RGATCY 2 cut(s) 114, 226
BstYI RGATCY 2 cut(s) 114, 226
BsuRI GGCC 3 cut(s) 63, 151, 319
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 282, 354
Cfr10I RCCGGY 2 cut(s) 147, 315
Csp6I GTAC 2 cut(s) 190, 378
CviAII CATG 2 cut(s) 29, 217
CviJI RGCY 8 cut(s) 63, 151, 169, 263, 280, 291, 319, 356
CviKI_1 RGCY 8 cut(s) 63, 151, 169, 263, 280, 291, 319, 356
CviQI GTAC 2 cut(s) 190, 378
DdeI CTNAG 2 cut(s) 136, 236
DpnI GATC 2 cut(s) 116, 228
DpnII GATC 2 cut(s) 114, 226
EaeI YGGCCR 2 cut(s) 149, 317
Eco31I GGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 32, 220
FaiI YATR 9 cut(s) 30, 36, 51, 78, 88, 109, 111, 218, 359
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 28, 216
Fnu4HI GCNGC 3 cut(s) 39, 261, 292
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 39, 261, 292
GluI GCNGC 3 cut(s) 39, 261, 292
HaeIII GGCC 3 cut(s) 63, 151, 319
HapII CCGG 2 cut(s) 148, 316
Hin1II CATG 2 cut(s) 32, 220
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 25, 328, 365
HpaII CCGG 2 cut(s) 148, 316
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 189, 203
HpyCH4V TGCA 3 cut(s) 197, 260, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 136, 236
Hsp92II CATG 2 cut(s) 32, 220
KpnI GGTACC 1 cut(s) 381
Kzo9I GATC 2 cut(s) 114, 226
LmnI GCTCC 2 cut(s) 160, 237
Lsp1109I GCAGC 3 cut(s) 25, 272, 278
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 116, 228
MboI GATC 2 cut(s) 114, 226
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 2 cut(s) 114, 226
MluCI AATT 2 cut(s) 18, 397
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 120, 128
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 148, 316
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 2 cut(s) 114, 226
NlaIII CATG 2 cut(s) 32, 220
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 80
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 328, 365
PkrI GCNGC 3 cut(s) 40, 262, 293
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 379
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 2 cut(s) 114, 226
RsaI GTAC 2 cut(s) 191, 379
RsaNI GTAC 2 cut(s) 190, 378
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 39, 261, 292
Sau3AI GATC 2 cut(s) 114, 226
SchI GAGTC 1 cut(s) 19
SetI ASST 5 cut(s) 171, 265, 282, 293, 358
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 2 cut(s) 18, 397
SsiI CCGC 1 cut(s) 158
TaaI ACNGT 2 cut(s) 189, 203
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 18, 397
TfiI GAWTC 2 cut(s) 328, 365
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 38, 260, 291
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 127
VspI ATTAAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.