RchiOBHm_Chr6g0259661
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000416
Physical Location & Seq
Reverse (-)
14907572 .. 14908180
609 bp
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UTR
Exon/CDS
Intron
PRQ23283

Sequence Viewer

Length: 375 bp
ATGAGGACTTTAAGCCGAAGCTCTCAGACTTTGGGCTTGCTAGAGACGGGCCAAAGGTTGGTAGGGACTTATGGGTATGCTGCCCCAAAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTCTTGTATGAGATCCTCACTGGGAGGCATGTGTTAGAAAGACACCGGCCAACAATGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGATAATAAAAAGTTCAGCATGATAATAGATCCACTCCTGAGAGACCAGTATTGTATTAATGTAGCTCGGAAAATCGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATTCGAATGGCAGGCCAACAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

124

Amino Acids

14.26

Weight (kDa)

9.65

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 18 - 123 6.9e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 23 - 123 1.5e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AclWI GGATC 2 cut(s) 151, 263
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 4 cut(s) 21, 211, 305, 333
AluI AGCT 4 cut(s) 21, 211, 305, 333
Alw26I GTCTC 2 cut(s) 38, 276
AlwI GGATC 2 cut(s) 151, 263
AoxI GGCC 4 cut(s) 49, 103, 191, 359
ApeKI GCWGC 2 cut(s) 80, 333
ApoI RAATTY 1 cut(s) 346
AseI ATTAAT 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 350
BbvI GCAGC 2 cut(s) 67, 320
BccI CCATC 2 cut(s) 114, 122
BcoDI GTCTC 2 cut(s) 38, 276
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 2 cut(s) 81, 334
BlsI GCNGC 2 cut(s) 82, 335
BmgT120I GGNCC 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 169, 286
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 38, 269
BseNI ACTGG 2 cut(s) 169, 286
BseXI GCAGC 2 cut(s) 67, 320
BshFI GGCC 4 cut(s) 51, 105, 193, 361
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 38, 276
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 4 cut(s) 51, 105, 193, 361
Bso31I GGTCTC 1 cut(s) 276
Bsp119I TTCGAA 1 cut(s) 350
Bsp143I GATC 2 cut(s) 156, 268
BspANI GGCC 4 cut(s) 51, 105, 193, 361
BspCNI CTCAG 2 cut(s) 37, 270
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 2 cut(s) 151, 263
BspT104I TTCGAA 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 2 cut(s) 169, 286
BssAI RCCGGY 1 cut(s) 189
BssMI GATC 2 cut(s) 156, 268
Bst4CI ACNGT 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 38, 359
BstDEI CTNAG 2 cut(s) 24, 278
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 2 cut(s) 159, 271
BstMAI GTCTC 2 cut(s) 38, 276
BstMBI GATC 2 cut(s) 156, 268
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 67, 320
BstX2I RGATCY 2 cut(s) 156, 268
BstYI RGATCY 2 cut(s) 156, 268
BsuRI GGCC 4 cut(s) 51, 105, 193, 361
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 38, 359
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 173, 259
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 24, 278
DpnI GATC 2 cut(s) 158, 270
DpnII GATC 2 cut(s) 156, 268
EaeI YGGCCR 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 346
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 2 cut(s) 176, 262
FaiI YATR 8 cut(s) 72, 78, 93, 120, 130, 153, 174, 260
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 172, 258
Fnu4HI GCNGC 2 cut(s) 81, 334
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 81, 334
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 81, 334
HaeIII GGCC 4 cut(s) 51, 105, 193, 361
HapII CCGG 1 cut(s) 190
Hin1II CATG 2 cut(s) 176, 262
HindIII AAGCTT 1 cut(s) 209
HpaII CCGG 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 27, 309
Hpy188III TCNNGA 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 24, 278
Hsp92II CATG 2 cut(s) 176, 262
Kzo9I GATC 2 cut(s) 156, 268
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 8 cut(s) 87, 150, 203, 249, 290, 299, 343, 350
Lsp1109I GCAGC 2 cut(s) 67, 320
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 158, 270
MboI GATC 2 cut(s) 156, 268
MflI RGATCY 2 cut(s) 156, 268
MluCI AATT 2 cut(s) 346, 370
MnlI CCTC 2 cut(s) 162, 170
MseI TTAA 2 cut(s) 11, 297
MspI CCGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 2 cut(s) 156, 268
NlaIII CATG 2 cut(s) 176, 262
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 1 cut(s) 176
NspV TTCGAA 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 2 cut(s) 82, 335
PshBI ATTAAT 1 cut(s) 297
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 2 cut(s) 156, 268
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 11, 297
SatI GCNGC 2 cut(s) 81, 334
Sau3AI GATC 2 cut(s) 156, 268
Sau96I GGNCC 1 cut(s) 49
SetI ASST 5 cut(s) 23, 59, 213, 307, 335
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 1 cut(s) 350
Sse9I AATT 2 cut(s) 346, 370
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 350
TasI AATT 2 cut(s) 346, 370
Tru1I TTAA 2 cut(s) 11, 297
Tru9I TTAA 2 cut(s) 11, 297
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 2 cut(s) 80, 333
Tsp45I GTSAC 1 cut(s) 122
TspRI CASTG 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 58
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 346
XceI RCATGY 1 cut(s) 176
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.