RchiOBHm_Chr7g0207261
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24649404 .. 24665233
15830 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18549

Sequence Viewer

Length: 834 bp
ATGTTATTGATTTGGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATTTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAAAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCTGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTGTGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAGGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACGGTAAAAAGTTTAGCATGATAATAGATCCACTCCTGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCAGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACTAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAGAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

277

Amino Acids

31.43

Weight (kDa)

9.36

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 8 - 242 2.6e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 8 - 244 3.9e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 542
AclWI GGATC 6 cut(s) 112, 125, 174, 212, 493, 605
AcoI YGGCCR 1 cut(s) 533
AfaI GTAC 3 cut(s) 382, 575, 763
AfiI CCNNNNNNNGG 3 cut(s) 73, 584, 828
AgsI TTSAA 6 cut(s) 44, 178, 190, 295, 440, 733
AhdI GACNNNNNGTC 1 cut(s) 269
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 7 cut(s) 82, 159, 337, 398, 647, 675, 740
AluI AGCT 7 cut(s) 82, 159, 337, 398, 647, 675, 740
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 6 cut(s) 112, 125, 174, 212, 493, 605
AoxI GGCC 3 cut(s) 365, 445, 533
ApeKI GCWGC 4 cut(s) 233, 422, 644, 675
AseI ATTAAT 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 56, 289, 386
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BamHI GGATCC 1 cut(s) 117
BauI CACGAG 2 cut(s) 208, 257
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 220, 409, 656, 662
BccI CCATC 3 cut(s) 98, 456, 464
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 86, 357
BfmI CTRYAG 2 cut(s) 99, 579
BglI GCCNNNNNGGC 1 cut(s) 665
BglII AGATCT 1 cut(s) 726
BisI GCNGC 4 cut(s) 234, 423, 645, 676
BlsI GCNGC 4 cut(s) 235, 424, 646, 677
Bme1390I CCNGG 1 cut(s) 275
BmeRI GACNNNNNGTC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 800
BmuI ACTGGG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 584, 828
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 3 cut(s) 270, 511, 628
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 322, 456
BseLI CCNNNNNNNGG 3 cut(s) 73, 584, 828
BseMII CTCAG 2 cut(s) 354, 611
BseNI ACTGG 3 cut(s) 270, 511, 628
BseXI GCAGC 4 cut(s) 220, 409, 656, 662
BshFI GGCC 3 cut(s) 367, 447, 535
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 532
BslFI GGGAC 2 cut(s) 276, 421
BslI CCNNNNNNNGG 3 cut(s) 73, 584, 828
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 276, 421
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 3 cut(s) 367, 447, 535
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 6 cut(s) 117, 166, 204, 498, 610, 726
BspACI CCGC 1 cut(s) 542
BspANI GGCC 3 cut(s) 367, 447, 535
BspCNI CTCAG 2 cut(s) 353, 612
BspLI GGNNCC 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 6 cut(s) 112, 125, 174, 212, 493, 605
BspTNI GGTCTC 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 3 cut(s) 270, 511, 628
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 6 cut(s) 117, 166, 204, 498, 610, 726
BssSI CACGAG 2 cut(s) 208, 257
BssT1I CCWWGG 1 cut(s) 200
Bst2BI CACGAG 2 cut(s) 208, 257
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 3 cut(s) 380, 573, 587
Bst6I CTCTTC 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 33, 354, 738
BstDEI CTNAG 4 cut(s) 160, 340, 520, 620
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 2 cut(s) 322, 456
BstKTI GATC 6 cut(s) 120, 169, 207, 501, 613, 729
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 6 cut(s) 117, 166, 204, 498, 610, 726
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 2 cut(s) 99, 579
BstV1I GCAGC 4 cut(s) 220, 409, 656, 662
BstX2I RGATCY 4 cut(s) 117, 498, 610, 726
BstYI RGATCY 4 cut(s) 117, 498, 610, 726
BsuRI GGCC 3 cut(s) 367, 447, 535
BtsCI GGATG 2 cut(s) 322, 456
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 33, 354, 738
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 381, 574, 762
CviAII CATG 2 cut(s) 386, 601
CviQI GTAC 3 cut(s) 381, 574, 762
DdeI CTNAG 4 cut(s) 160, 340, 520, 620
DpnI GATC 6 cut(s) 119, 168, 206, 500, 612, 728
DpnII GATC 6 cut(s) 117, 166, 204, 498, 610, 726
DriI GACNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 618
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 389, 604
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 2 cut(s) 276, 421
FatI CATG 2 cut(s) 385, 600
Fnu4HI GCNGC 4 cut(s) 234, 423, 645, 676
FokI GGATG 2 cut(s) 329, 443
Fsp4HI GCNGC 4 cut(s) 234, 423, 645, 676
FspBI CTAG 2 cut(s) 86, 357
GluI GCNGC 4 cut(s) 234, 423, 645, 676
HaeIII GGCC 3 cut(s) 367, 447, 535
HapII CCGG 1 cut(s) 532
Hin1II CATG 2 cut(s) 389, 604
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 712, 749
HpaII CCGG 1 cut(s) 532
HphI GGTGA 3 cut(s) 56, 289, 386
Hpy188I TCNGA 2 cut(s) 343, 651
Hpy188III TCNNGA 4 cut(s) 208, 287, 619, 730
HpyCH4III ACNGT 3 cut(s) 380, 573, 587
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 35, 581, 644, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 4 cut(s) 160, 340, 520, 620
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 2 cut(s) 389, 604
Kzo9I GATC 6 cut(s) 117, 166, 204, 498, 610, 726
LmnI GCTCC 2 cut(s) 156, 544
Lsp1109I GCAGC 4 cut(s) 220, 409, 656, 662
LweI GCATC 1 cut(s) 800
MaeI CTAG 2 cut(s) 86, 357
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 213, 374, 464
MalI GATC 6 cut(s) 119, 168, 206, 500, 612, 728
MboI GATC 6 cut(s) 117, 166, 204, 498, 610, 726
MboII GAAGA 1 cut(s) 188
MflI RGATCY 4 cut(s) 117, 498, 610, 726
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 4 cut(s) 44, 654, 781, 803
MmeI TCCRAC 2 cut(s) 145, 327
MseI TTAA 2 cut(s) 327, 639
MspA1I CMGCKG 2 cut(s) 398, 542
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 665
NdeII GATC 6 cut(s) 117, 166, 204, 498, 610, 726
NlaIII CATG 2 cut(s) 389, 604
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 2 cut(s) 374, 464
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 2 cut(s) 712, 749
PkrI GCNGC 4 cut(s) 235, 424, 646, 677
PshBI ATTAAT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 365
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 4 cut(s) 117, 498, 610, 726
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 382, 575, 763
RsaNI GTAC 3 cut(s) 381, 574, 762
SaqAI TTAA 2 cut(s) 327, 639
SatI GCNGC 4 cut(s) 234, 423, 645, 676
Sau3AI GATC 6 cut(s) 117, 166, 204, 498, 610, 726
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 1 cut(s) 800
SfcI CTRYAG 2 cut(s) 99, 579
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 4 cut(s) 44, 654, 781, 803
SsiI CCGC 1 cut(s) 542
SspMI CTAG 2 cut(s) 86, 357
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 380, 573, 587
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 286, 392
TasI AATT 4 cut(s) 44, 654, 781, 803
TfiI GAWTC 2 cut(s) 712, 749
Tru1I TTAA 2 cut(s) 327, 639
Tru9I TTAA 2 cut(s) 327, 639
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 2 cut(s) 374, 464
TseI GCWGC 4 cut(s) 233, 422, 644, 675
Tsp45I GTSAC 2 cut(s) 374, 464
TspDTI ATGAA 2 cut(s) 153, 725
TspRI CASTG 1 cut(s) 511
VspI ATTAAT 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 2 cut(s) 86, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.