FvH4_7g08930
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000416
Physical Location & Seq
Reverse (-)
8712303 .. 8715659
3357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08930.t2

Sequence Viewer

Length: 1284 bp
ATGAAGTGTTTCTACTATTTTAAAGAAAAGTCTAGGACCAGGGAACAAAGATCAGCTCCTGAGCTAAAAGACCAAAGCGGCTCTGATTATTCAGGAGCTAGTAGGGTGGTCAAGTCTTCCTGTTCAGCAAATTCACCGCGCGGTATACCAGAATTGTATGAAGAAAAGGCTCATAATTTAAGGGTGTTTACTTTCCAAGAGCTGAGGCAGGCAACAAATGATTTCCATAGGTTACTTAAGATTGGAGAAGGTGGATTTGGCAATGTCTATAAGGGTTCAATTAAGCCTGCTGAGTCCAAGGGCGATCGAGTTGTAGTCGCCATTAAAAAGCTGAACAACGATGGCTTACAGGGTCACAAACAATGGGTAGCAGAAGTTCAATTTCTAAGTGTTGTGGAGCACCCGAATCTTGTCAAACTAATAGGTTACTGTGCTGTGGATGGAGAAAGAGGAATTCAAAGACTACTCGTATACGAATATATGCCAAACAGAAGTTTAGAAGATCATATATTTAACAGGACATACCCAACTGTTCCTTGGGAGACAAGATTACAGATAATACTGGGAGCAGCTCAAGGATTAGCTTATCTCCATGAAGGATTGGAAATTCAGGTGATATATCGAGATTTCAAATGTGCAAATGTGTTACTGGATGAGAATTTCAAACCGAAGCTTTCAGACTTTGGGCTAGCAAGGGAGGGGCCAATGGTTGGGCATACTCATGTGTCAACTGCAGTAGTGGGAACATATGGATATGCTGCTCCAGATTACATTGAGACAGGTCATCTGACAACTAAGAGTGATGTCTGGAGCTTTGGTGTGGTGTTGTATGAAATTCTGACAGGCAGGCGATCATTAGAGAGAAACCGGCCAAGAACAGAACAGAAACTCTTAGAATGGGTGAAACAGTTTCCTCCTGATAGCAAAAAGTTTGGCTTGTTGATGGATCCTCGACTTGAAAGCAGTTATTTAAAAAGTGCAGCAAGAAAAATTGCCAAGTTGGCTAATAGTTGTCTGTCAAAGAGTGCAAAAGACCGGCCAACAATGAGTCAGGTAGTAGAGACATTGAAGCAGATCATCCAAGACTCAAAAGAGGCTAACCAAACCGAGAGAAGTCCTGACTCTTTTGAAAATGACCAAGTTGACACGAAGACAAAGGAGAATCAGTTCGGGGCCTCAGAGTCGTGGAAAAGAAGAATGACTCACCTGGCAAAACTAGGAGAGCATGTGGAGAGTGCTAGTAGAAGAAGATTCATGATAATGCAGAGGGCAAAGGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

428

Amino Acids

48.62

Weight (kDa)

9.32

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 76 - 354 2.9e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 80 - 356 3.5e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 2 cut(s) 145, 471
AccII CGCG 2 cut(s) 139, 141
AciI CCGC 3 cut(s) 78, 137, 141
AclWI GGATC 2 cut(s) 941, 954
AcoI YGGCCR 2 cut(s) 869, 1037
AcsI RAATTY 5 cut(s) 130, 453, 606, 658, 834
AfiI CCNNNNNNNGG 1 cut(s) 710
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 8 cut(s) 279, 380, 458, 631, 664, 959, 1069, 1130
AjnI CCWGG 2 cut(s) 38, 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
AluBI AGCT 9 cut(s) 56, 64, 98, 202, 331, 572, 584, 673, 813
AluI AGCT 9 cut(s) 56, 64, 98, 202, 331, 572, 584, 673, 813
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 3 cut(s) 536, 770, 1055
AlwI GGATC 2 cut(s) 941, 954
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 4 cut(s) 701, 869, 1037, 1173
ApeKI GCWGC 3 cut(s) 569, 758, 980
ApoI RAATTY 5 cut(s) 130, 453, 606, 658, 834
Asp700I GAANNNNTTC 2 cut(s) 8, 1166
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 3 cut(s) 36, 701, 1173
AsuHPI GGTGA 4 cut(s) 126, 625, 913, 1196
AsuNHI GCTAGC 1 cut(s) 688
AvaII GGWCC 1 cut(s) 36
BamHI GGATCC 1 cut(s) 946
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 108, 1157
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 581, 745, 992
BccI CCATC 3 cut(s) 335, 434, 937
BciT130I CCWGG 2 cut(s) 40, 1208
BcoDI GTCTC 3 cut(s) 536, 770, 1055
BfaI CTAG 5 cut(s) 33, 99, 689, 1217, 1239
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 1001
BisI GCNGC 4 cut(s) 79, 570, 759, 981
BlsI GCNGC 4 cut(s) 80, 571, 760, 982
Bme1390I CCNGG 2 cut(s) 40, 1208
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 3 cut(s) 36, 701, 1173
BmiI GGNNCC 3 cut(s) 702, 948, 1174
BmrFI CCNGG 2 cut(s) 40, 1208
BmrI ACTGGG 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 692
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 2 cut(s) 108, 1157
BpmI CTGGAG 2 cut(s) 747, 829
Bpu10I CCTNAGC 2 cut(s) 60, 203
BpuEI CTTGAG 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 39, 297, 536
BsaXI ACNNNNNCTCC 6 cut(s) 802, 832, 1151, 1181, 1212, 1242
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse118I RCCGGY 2 cut(s) 867, 1035
Bse1I ACTGG 2 cut(s) 567, 654
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 2 cut(s) 40, 1208
BseDI CCNNGG 3 cut(s) 39, 297, 536
BseGI GGATG 3 cut(s) 445, 658, 1077
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 4 cut(s) 51, 194, 282, 1191
BseNI ACTGG 2 cut(s) 567, 654
BseXI GCAGC 3 cut(s) 581, 745, 992
BsgI GTGCAG 1 cut(s) 999
Bsh1236I CGCG 2 cut(s) 139, 141
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 4 cut(s) 703, 871, 1039, 1175
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 868, 1036
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 3 cut(s) 536, 770, 1055
BsnI GGCC 4 cut(s) 703, 871, 1039, 1175
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
BspACI CCGC 3 cut(s) 78, 137, 141
BspANI GGCC 4 cut(s) 703, 871, 1039, 1175
BspCNI CTCAG 4 cut(s) 52, 195, 283, 1190
BspFNI CGCG 2 cut(s) 139, 141
BspHI TCATGA 1 cut(s) 1254
BspLI GGNNCC 3 cut(s) 702, 948, 1174
BspMAI CTGCAG 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 2 cut(s) 941, 954
BspTI CTTAAG 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 867, 1035
BsrI ACTGG 2 cut(s) 567, 654
BssAI RCCGGY 2 cut(s) 867, 1035
BssECI CCNNGG 3 cut(s) 39, 297, 536
BssMI GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
BssNAI GTATAC 2 cut(s) 146, 472
BssT1I CCWWGG 2 cut(s) 297, 536
Bst1107I GTATAC 2 cut(s) 146, 472
Bst2UI CCWGG 2 cut(s) 40, 1208
Bst4CI ACNGT 3 cut(s) 431, 532, 909
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 4 cut(s) 210, 288, 690, 848
BstDEI CTNAG 7 cut(s) 60, 203, 291, 386, 795, 892, 1177
BstF5I GGATG 3 cut(s) 445, 658, 1077
BstFNI CGCG 2 cut(s) 139, 141
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 6 cut(s) 53, 307, 505, 854, 949, 1077
BstMAI GTCTC 3 cut(s) 536, 770, 1055
BstMBI GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 1001
BstNI CCWGG 2 cut(s) 40, 1208
BstNSI RCATGY 1 cut(s) 1229
BstSCI CCNGG 2 cut(s) 38, 1206
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 2 cut(s) 139, 141
BstV1I GCAGC 3 cut(s) 581, 745, 992
BstV2I GAAGAC 2 cut(s) 108, 1157
BstX2I RGATCY 1 cut(s) 946
BstYI RGATCY 1 cut(s) 946
BstZ17I GTATAC 2 cut(s) 146, 472
BsuRI GGCC 4 cut(s) 703, 871, 1039, 1175
BtsCI GGATG 3 cut(s) 445, 658, 1077
Cac8I GCNNGC 4 cut(s) 210, 288, 690, 848
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 1254
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 2 cut(s) 867, 1035
Cfr13I GGNCC 3 cut(s) 36, 701, 1173
CviAII CATG 4 cut(s) 593, 722, 1226, 1255
DdeI CTNAG 7 cut(s) 60, 203, 291, 386, 795, 892, 1177
DpnI GATC 6 cut(s) 52, 306, 504, 853, 948, 1076
DpnII GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
DraI TTTAAA 2 cut(s) 22, 972
EaeI YGGCCR 2 cut(s) 869, 1037
Eco130I CCWWGG 2 cut(s) 297, 536
Eco47I GGWCC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 1173
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 38, 1206
EcoT14I CCWWGG 2 cut(s) 297, 536
ErhI CCWWGG 2 cut(s) 297, 536
FaeI CATG 4 cut(s) 596, 725, 1229, 1258
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FatI CATG 4 cut(s) 592, 721, 1225, 1254
FauNDI CATATG 1 cut(s) 748
FblI GTMKAC 2 cut(s) 145, 471
Fnu4HI GCNGC 4 cut(s) 79, 570, 759, 981
FokI GGATG 3 cut(s) 452, 665, 1064
Fsp4HI GCNGC 4 cut(s) 79, 570, 759, 981
FspBI CTAG 5 cut(s) 33, 99, 689, 1217, 1239
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 79, 570, 759, 981
GsuI CTGGAG 2 cut(s) 747, 829
HaeIII GGCC 4 cut(s) 703, 871, 1039, 1175
HapII CCGG 2 cut(s) 868, 1036
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 596, 725, 1229, 1258
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 729, 1144
HindII GTYRAC 2 cut(s) 729, 1144
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 9 cut(s) 293, 406, 1048, 1085, 1121, 1162, 1181, 1201, 1251
HpaII CCGG 2 cut(s) 868, 1036
HphI GGTGA 4 cut(s) 126, 625, 913, 1196
Hpy166II GTNNAC 5 cut(s) 146, 189, 472, 729, 1144
Hpy188I TCNGA 5 cut(s) 85, 679, 789, 840, 1180
Hpy188III TCNNGA 8 cut(s) 59, 93, 623, 764, 808, 917, 1118, 1255
Hpy8I GTNNAC 5 cut(s) 146, 189, 472, 729, 1144
HpyAV CCTTC 2 cut(s) 242, 590
HpyCH4III ACNGT 3 cut(s) 431, 532, 909
HpyCH4V TGCA 5 cut(s) 638, 734, 980, 1028, 1264
HpyF10VI GCNNNNNNNGC 1 cut(s) 1001
HpyF3I CTNAG 7 cut(s) 60, 203, 291, 386, 795, 892, 1177
Hsp92II CATG 4 cut(s) 596, 725, 1229, 1258
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
LmnI GCTCC 6 cut(s) 61, 95, 397, 566, 766, 810
Lsp1109I GCAGC 3 cut(s) 581, 745, 992
MaeI CTAG 5 cut(s) 33, 99, 689, 1217, 1239
MaeIII GTNAC 5 cut(s) 231, 353, 425, 645, 1276
MalI GATC 6 cut(s) 52, 306, 504, 853, 948, 1076
MboI GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
MboII GAAGA 7 cut(s) 108, 173, 512, 1162, 1206, 1257, 1260
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 1 cut(s) 402
MlyI GAGTC 6 cut(s) 302, 1057, 1079, 1115, 1190, 1195
MnlI CCTC 8 cut(s) 198, 443, 691, 924, 960, 1087, 1186, 1260
MroXI GAANNNNTTC 2 cut(s) 8, 1166
MseI TTAA 7 cut(s) 21, 179, 237, 282, 324, 513, 971
MslI CAYNNNNRTG 2 cut(s) 720, 1259
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 2 cut(s) 868, 1036
MspR9I CCNGG 2 cut(s) 40, 1208
MvaI CCWGG 2 cut(s) 40, 1208
MvnI CGCG 2 cut(s) 139, 141
MwoI GCNNNNNNNGC 1 cut(s) 1001
NdeI CATATG 1 cut(s) 748
NdeII GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 4 cut(s) 596, 725, 1229, 1258
NlaIV GGNNCC 3 cut(s) 702, 948, 1174
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 1229
PagI TCATGA 1 cut(s) 1254
PdmI GAANNNNTTC 2 cut(s) 8, 1166
PfeI GAWTC 3 cut(s) 406, 1162, 1251
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 4 cut(s) 80, 571, 760, 982
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 6 cut(s) 301, 1056, 1079, 1115, 1189, 1195
PpsI GAGTC 6 cut(s) 301, 1056, 1079, 1115, 1189, 1195
Psp6I CCWGG 2 cut(s) 38, 1206
PspGI CCWGG 2 cut(s) 38, 1206
PspN4I GGNNCC 3 cut(s) 702, 948, 1174
PspPI GGNCC 3 cut(s) 36, 701, 1173
PsrI GAACNNNNNNTAC 2 cut(s) 360, 392
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 946
PvuI CGATCG 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 720, 1259
SaqAI TTAA 7 cut(s) 21, 179, 237, 282, 324, 513, 971
SatI GCNGC 4 cut(s) 79, 570, 759, 981
Sau3AI GATC 6 cut(s) 50, 304, 502, 851, 946, 1074
Sau96I GGNCC 3 cut(s) 36, 701, 1173
SchI GAGTC 6 cut(s) 302, 1057, 1079, 1115, 1190, 1195
ScrFI CCNGG 2 cut(s) 40, 1208
SduI GDGCHC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 720, 1259
SmlI CTYRAG 2 cut(s) 236, 573
SmoI CTYRAG 2 cut(s) 236, 573
SsiI CCGC 3 cut(s) 78, 137, 141
SspMI CTAG 5 cut(s) 33, 99, 689, 1217, 1239
StyD4I CCNGG 2 cut(s) 38, 1206
StyI CCWWGG 2 cut(s) 297, 536
TaaI ACNGT 3 cut(s) 431, 532, 909
TaqI TCGA 3 cut(s) 307, 622, 952
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 3 cut(s) 406, 1162, 1251
Tru1I TTAA 7 cut(s) 21, 179, 237, 282, 324, 513, 971
Tru9I TTAA 7 cut(s) 21, 179, 237, 282, 324, 513, 971
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 3 cut(s) 569, 758, 980
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 17, 174, 609, 846, 1243
Van91I CCANNNNNTGG 1 cut(s) 710
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 5 cut(s) 130, 453, 606, 658, 834
XceI RCATGY 1 cut(s) 1229
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmiI GTMKAC 2 cut(s) 145, 471
XmnI GAANNNNTTC 2 cut(s) 8, 1166
XspI CTAG 5 cut(s) 33, 99, 689, 1217, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.