RchiOBHm_Chr7g0206861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24392465 .. 24392701
237 bp
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UTR
Exon/CDS
Intron
PRQ18515

Sequence Viewer

Length: 174 bp
ATGGTAAATAGACTTGTTTCTCTCAGCTGGAAAACATATCATGCAGCGTTCTTTTGTCTGACAATGCTCTTACCTGTTACTAAAGAAAGAGATTTTTTCTCTCAAGAACTTGAATTGGAACAGATCGTCAAATTTTGTGGATGGATAAAAGTAATGATTAAGCCCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.84

Weight (kDa)

9.18

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 131
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 131
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 135
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 87
BseGI GGATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 36
BssMI GATC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 146
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 1 cut(s) 41
CviJI RGCY 2 cut(s) 27, 163
CviKI_1 RGCY 2 cut(s) 27, 163
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
FaeI CATG 1 cut(s) 44
FaiI YATR 2 cut(s) 37, 42
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 45
FspEI CC 5 cut(s) 13, 87, 101, 123, 127
GluI GCNGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 2 cut(s) 13, 87
Lsp1109I GCAGC 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MluCI AATT 2 cut(s) 113, 131
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 27
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 123
SetI ASST 2 cut(s) 29, 76
SgeI CNNG 6 cut(s) 26, 40, 53, 86, 116, 122
SmlI CTYRAG 2 cut(s) 102, 166
SmoI CTYRAG 2 cut(s) 102, 166
Sse9I AATT 2 cut(s) 113, 131
TasI AATT 2 cut(s) 113, 131
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 44
XapI RAATTY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.