RchiOBHm_Chr7g0207251
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24644846 .. 24645191
346 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18548

Sequence Viewer

Length: 135 bp
ATGTATCGACGGCAGACTCATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCGCTCCTGAGAGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

44

Amino Acids

5.33

Weight (kDa)

8.1

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 107
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 107
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 130
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 75, 89
BstDEI CTNAG 1 cut(s) 122
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 20, 103
CviJI RGCY 1 cut(s) 54
CviKI_1 RGCY 1 cut(s) 54
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 120
FaeI CATG 2 cut(s) 23, 106
FaiI YATR 4 cut(s) 21, 27, 42, 104
FatI CATG 2 cut(s) 19, 102
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 2 cut(s) 23, 106
HinfI GANTC 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 12
HpyCH4III ACNGT 2 cut(s) 75, 89
HpyCH4V TGCA 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 2 cut(s) 23, 106
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 36, 48, 93
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 112
MflI RGATCY 1 cut(s) 112
MlyI GAGTC 1 cut(s) 10
MslI CAYNNNNRTG 1 cut(s) 24
NdeII GATC 1 cut(s) 112
NlaIII CATG 2 cut(s) 23, 106
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 112
SchI GAGTC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 81
SgeI CNNG 5 cut(s) 32, 47, 63, 92, 115
SmiMI CAYNNNNRTG 1 cut(s) 24
SsiI CCGC 1 cut(s) 116
TaaI ACNGT 2 cut(s) 75, 89
TaqI TCGA 1 cut(s) 7
TseI GCWGC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.