RchiOBHm_Chr7g0206891
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24421395 .. 24424861
3467 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18518

Sequence Viewer

Length: 780 bp
ATGGGCTCGGGCCGGGCCAAAACATTTTTTTTTTATTTTTCGGGCCGGCAGGGCCGGGCTTCTTTTAAAAATCAAGGCCCAGGGCCGCCCATGGGCCCAGGGCCTTACGGGCTTTTTAGGGCCGGGCCAAGCCGGGCTTTTTTGGATGGGCAGGGCCGAGCCCATTATATTTATATGTCATATTATTTTGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAGCAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGTTGCTGCTCAAGGATTGGCTTATCTACACGAGGGATGGAAGTCCAGTTACATATATTGGTGGACACTGTCACTTCAGCAACTGTCCATTATCTTGATGTATTTTGTGATATATCAAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCAGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCGCTAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGGCACCGGCCAATAGCGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

29.66

Weight (kDa)

9.16

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 66 - 253 1.5e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 66 - 145 4.2e-09 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 170 - 247 2.6e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 759
AciI CCGC 2 cut(s) 86, 773
AclWI GGATC 5 cut(s) 286, 299, 348, 386, 724
AcoI YGGCCR 1 cut(s) 764
AcuI CTGAAG 2 cut(s) 461, 562
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 2 cut(s) 92, 247
AgsI TTSAA 3 cut(s) 218, 364, 526
AjnI CCWGG 2 cut(s) 79, 97
AluBI AGCT 3 cut(s) 256, 333, 568
AluI AGCT 3 cut(s) 256, 333, 568
Alw21I GWGCWC 1 cut(s) 543
AlwI GGATC 5 cut(s) 286, 299, 348, 386, 724
AlwNI CAGNNNCTG 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 7
ApaI GGGCCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 407, 653
AspLEI GCGC 1 cut(s) 658
AsuC2I CCSGG 4 cut(s) 14, 56, 124, 134
AsuHPI GGTGA 2 cut(s) 230, 617
AvaI CYCGRG 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 98
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 759
BanII GRGCYC 3 cut(s) 8, 98, 163
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BauI CACGAG 2 cut(s) 382, 431
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 394, 640
BccI CCATC 5 cut(s) 140, 272, 432, 687, 695
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 81, 99
BcnI CCSGG 4 cut(s) 14, 56, 124, 134
BfaI CTAG 3 cut(s) 260, 588, 659
BfmI CTRYAG 1 cut(s) 273
BglI GCCNNNNNGGC 2 cut(s) 51, 109
BisI GCNGC 3 cut(s) 86, 408, 654
BlsI GCNGC 3 cut(s) 87, 409, 655
Bme1390I CCNGG 6 cut(s) 14, 56, 81, 99, 124, 134
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 96, 293, 761
BmrFI CCNGG 6 cut(s) 14, 56, 81, 99, 124, 134
BmrI ACTGGG 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 396
BpuMI CCSGG 4 cut(s) 14, 56, 124, 134
BsaJI CCNNGG 6 cut(s) 79, 80, 90, 97, 98, 374
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 247
Bse118I RCCGGY 2 cut(s) 45, 762
Bse1I ACTGG 2 cut(s) 447, 742
BseBI CCWGG 2 cut(s) 81, 99
BseDI CCNNGG 6 cut(s) 79, 80, 90, 97, 98, 374
BseGI GGATG 4 cut(s) 151, 443, 553, 687
BseLI CCNNNNNNNGG 2 cut(s) 92, 247
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 2 cut(s) 447, 742
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 2 cut(s) 394, 640
BshNI GGYRCC 1 cut(s) 759
BsiHKAI GWGCWC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 6 cut(s) 13, 46, 55, 123, 133, 763
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 2 cut(s) 92, 247
BsmFI GGGAC 1 cut(s) 652
BsoBI CYCGRG 1 cut(s) 7
Bsp120I GGGCCC 1 cut(s) 94
Bsp1286I GDGCHC 4 cut(s) 8, 98, 163, 543
Bsp143I GATC 4 cut(s) 291, 340, 378, 729
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 2 cut(s) 86, 773
BspCNI CTCAG 1 cut(s) 584
BspLI GGNNCC 3 cut(s) 96, 293, 761
BspPI GGATC 5 cut(s) 286, 299, 348, 386, 724
BspT107I GGYRCC 1 cut(s) 759
BsrFI RCCGGY 2 cut(s) 45, 762
BsrI ACTGG 2 cut(s) 447, 742
BssAI RCCGGY 2 cut(s) 45, 762
BssECI CCNNGG 6 cut(s) 79, 80, 90, 97, 98, 374
BssMI GATC 4 cut(s) 291, 340, 378, 729
BssSI CACGAG 2 cut(s) 382, 431
BssT1I CCWWGG 2 cut(s) 90, 374
Bst2BI CACGAG 2 cut(s) 382, 431
Bst2UI CCWGG 2 cut(s) 81, 99
Bst4CI ACNGT 3 cut(s) 471, 486, 611
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 3 cut(s) 47, 207, 585
BstDEI CTNAG 3 cut(s) 334, 571, 751
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 605
BstF5I GGATG 4 cut(s) 151, 443, 553, 687
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 4 cut(s) 294, 343, 381, 732
BstMBI GATC 4 cut(s) 291, 340, 378, 729
BstMWI GCNNNNNNNGC 2 cut(s) 51, 109
BstNI CCWGG 2 cut(s) 81, 99
BstPI GGTNACC 1 cut(s) 605
BstSCI CCNGG 6 cut(s) 12, 54, 79, 97, 122, 132
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 394, 640
BstX2I RGATCY 2 cut(s) 291, 729
BstYI RGATCY 2 cut(s) 291, 729
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 151, 443, 553, 687
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 467, 636, 735
Cac8I GCNNGC 3 cut(s) 47, 207, 585
CaiI CAGNNNCTG 1 cut(s) 484
CfoI GCGC 1 cut(s) 658
Cfr10I RCCGGY 2 cut(s) 45, 762
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 91, 617
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 3 cut(s) 334, 571, 751
DpnI GATC 4 cut(s) 293, 342, 380, 731
DpnII GATC 4 cut(s) 291, 340, 378, 729
DraI TTTAAA 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 2 cut(s) 90, 374
Eco24I GRGCYC 3 cut(s) 8, 98, 163
Eco57I CTGAAG 2 cut(s) 461, 562
Eco88I CYCGRG 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 79, 97
EcoT14I CCWWGG 2 cut(s) 90, 374
EcoT38I GRGCYC 3 cut(s) 8, 98, 163
ErhI CCWWGG 2 cut(s) 90, 374
FaeI CATG 2 cut(s) 94, 620
FalI AAGNNNNNCTT 4 cut(s) 121, 153, 189, 221
FaqI GGGAC 1 cut(s) 652
FatI CATG 2 cut(s) 90, 616
Fnu4HI GCNGC 3 cut(s) 86, 408, 654
FokI GGATG 4 cut(s) 158, 450, 560, 674
FriOI GRGCYC 3 cut(s) 8, 98, 163
Fsp4HI GCNGC 3 cut(s) 86, 408, 654
FspBI CTAG 3 cut(s) 260, 588, 659
GlaI GCGC 1 cut(s) 657
GluI GCNGC 3 cut(s) 86, 408, 654
HapII CCGG 6 cut(s) 13, 46, 55, 123, 133, 763
HhaI GCGC 1 cut(s) 658
Hin1II CATG 2 cut(s) 94, 620
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HindIII AAGCTT 1 cut(s) 254
HpaII CCGG 6 cut(s) 13, 46, 55, 123, 133, 763
HphI GGTGA 2 cut(s) 230, 617
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 1 cut(s) 574
Hpy188III TCNNGA 3 cut(s) 382, 496, 518
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 3 cut(s) 471, 486, 611
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 109
HpyF3I CTNAG 3 cut(s) 334, 571, 751
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 2 cut(s) 94, 620
HspAI GCGC 1 cut(s) 656
KroI GCCGGC 1 cut(s) 45
KroNI GCCGGC 1 cut(s) 47
Kzo9I GATC 4 cut(s) 291, 340, 378, 729
LmnI GCTCC 1 cut(s) 330
Lsp1109I GCAGC 2 cut(s) 394, 640
MaeI CTAG 3 cut(s) 260, 588, 659
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 5 cut(s) 387, 449, 471, 605, 695
MalI GATC 4 cut(s) 293, 342, 380, 731
MboI GATC 4 cut(s) 291, 340, 378, 729
MboII GAAGA 1 cut(s) 362
MflI RGATCY 2 cut(s) 291, 729
MhlI GDGCHC 4 cut(s) 8, 98, 163, 543
MluCI AATT 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 319, 558
MroNI GCCGGC 1 cut(s) 45
MseI TTAA 2 cut(s) 66, 558
MspI CCGG 6 cut(s) 13, 46, 55, 123, 133, 763
MspR9I CCNGG 6 cut(s) 14, 56, 81, 99, 124, 134
MvaI CCWGG 2 cut(s) 81, 99
MwoI GCNNNNNNNGC 2 cut(s) 51, 109
NaeI GCCGGC 1 cut(s) 47
NciI CCSGG 4 cut(s) 14, 56, 124, 134
NcoI CCATGG 1 cut(s) 90
NdeII GATC 4 cut(s) 291, 340, 378, 729
NgoMIV GCCGGC 1 cut(s) 45
NlaIII CATG 2 cut(s) 94, 620
NlaIV GGNNCC 3 cut(s) 96, 293, 761
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 3 cut(s) 471, 605, 695
PasI CCCWGGG 2 cut(s) 80, 98
PdiI GCCGGC 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 469
PkrI GCNGC 3 cut(s) 87, 409, 655
Psp6I CCWGG 2 cut(s) 79, 97
PspEI GGTNACC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 79, 97
PspN4I GGNNCC 3 cut(s) 96, 293, 761
PspOMI GGGCCC 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 484
PsuI RGATCY 2 cut(s) 291, 729
PsyI GACNNNGTC 1 cut(s) 469
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 66, 558
SatI GCNGC 3 cut(s) 86, 408, 654
Sau3AI GATC 4 cut(s) 291, 340, 378, 729
ScrFI CCNGG 6 cut(s) 14, 56, 81, 99, 124, 134
SduI GDGCHC 4 cut(s) 8, 98, 163, 543
SetI ASST 6 cut(s) 216, 258, 335, 389, 540, 570
SfcI CTRYAG 1 cut(s) 273
SfiI GGCCNNNNNGGCC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 1 cut(s) 218
SsiI CCGC 2 cut(s) 86, 773
SspMI CTAG 3 cut(s) 260, 588, 659
StyD4I CCNGG 6 cut(s) 12, 54, 79, 97, 122, 132
StyI CCWWGG 2 cut(s) 90, 374
TaaI ACNGT 3 cut(s) 471, 486, 611
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 623, 669
TasI AATT 1 cut(s) 218
TauI GCSGC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 66, 558
Tru9I TTAA 2 cut(s) 66, 558
TscAI CASTG 3 cut(s) 474, 636, 742
TseFI GTSAC 3 cut(s) 471, 605, 695
TseI GCWGC 2 cut(s) 407, 653
Tsp45I GTSAC 3 cut(s) 471, 605, 695
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 3 cut(s) 474, 636, 742
Tth111I GACNNNGTC 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XspI CTAG 3 cut(s) 260, 588, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.