RchiOBHm_Chr7g0206991
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24463407 .. 24467383
3977 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18525

Sequence Viewer

Length: 1041 bp
ATGTTGTTTCTACACGCATGCATCTTTCCCTTCAAATTCAAATCCAAGAAGAAACGAAAGGAGTCAAAATCAGCTCTGGATTTAAGAAACAAAAGCGACTCCTTAACTCCGGTATTAGACCTTGCCTCGAAATCTCTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAAAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGGGAAGGGGGATTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATTTTGGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGGGGCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGATTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCTAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCAATATTCTATTAATGCAGCTCGAAAAATTGCCAAGTTGGCAGATATGCAAAAGACCGGCCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

39.34

Weight (kDa)

9.62

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 79 - 297 4e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 81 - 291 1.5e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 228
AciI CCGC 1 cut(s) 887
AclWI GGATC 6 cut(s) 457, 470, 519, 557, 838, 950
AcoI YGGCCR 2 cut(s) 878, 1030
AcsI RAATTY 2 cut(s) 35, 184
AcuI CTGAAG 1 cut(s) 217
AfaI GTAC 3 cut(s) 167, 727, 920
AfiI CCNNNNNNNGG 2 cut(s) 302, 418
AgsI TTSAA 9 cut(s) 34, 40, 190, 222, 343, 389, 523, 535, 640
AhdI GACNNNNNGTC 1 cut(s) 614
AjnI CCWGG 1 cut(s) 618
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 8 cut(s) 74, 211, 250, 354, 427, 682, 898, 992
AluI AGCT 8 cut(s) 74, 211, 250, 354, 427, 682, 898, 992
Alw21I GWGCWC 2 cut(s) 213, 657
Alw26I GTCTC 1 cut(s) 963
AlwI GGATC 6 cut(s) 457, 470, 519, 557, 838, 950
AoxI GGCC 4 cut(s) 710, 790, 878, 1030
ApeKI GCWGC 3 cut(s) 578, 767, 989
ApoI RAATTY 2 cut(s) 35, 184
AseI ATTAAT 1 cut(s) 984
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 4 cut(s) 135, 401, 634, 731
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BamHI GGATCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 213
BauI CACGAG 2 cut(s) 553, 602
Bbv12I GWGCWC 2 cut(s) 213, 657
BbvI GCAGC 3 cut(s) 565, 754, 1001
BccI CCATC 3 cut(s) 443, 801, 809
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 963
BfaI CTAG 3 cut(s) 431, 702, 773
BfmI CTRYAG 2 cut(s) 444, 924
BfuAI ACCTGC 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 1010
BisI GCNGC 3 cut(s) 579, 768, 990
BlsI GCNGC 3 cut(s) 580, 769, 991
Bme1390I CCNGG 1 cut(s) 620
BmeRI GACNNNNNGTC 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 620
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 861
Bpu10I CCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 963
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 418
Bse118I RCCGGY 2 cut(s) 876, 1028
Bse1I ACTGG 2 cut(s) 615, 856
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 667, 801
BseLI CCNNNNNNNGG 2 cut(s) 302, 418
BseMII CTCAG 2 cut(s) 226, 699
BseNI ACTGG 2 cut(s) 615, 856
BseXI GCAGC 3 cut(s) 565, 754, 1001
BshFI GGCC 4 cut(s) 712, 792, 880, 1032
BsiHKAI GWGCWC 2 cut(s) 213, 657
BsiSI CCGG 3 cut(s) 110, 877, 1029
BslFI GGGAC 2 cut(s) 621, 766
BslI CCNNNNNNNGG 2 cut(s) 302, 418
BsmAI GTCTC 1 cut(s) 963
BsmFI GGGAC 2 cut(s) 621, 766
BsnI GGCC 4 cut(s) 712, 792, 880, 1032
Bso31I GGTCTC 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 213, 657
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 5 cut(s) 462, 511, 549, 843, 955
BspACI CCGC 1 cut(s) 887
BspANI GGCC 4 cut(s) 712, 792, 880, 1032
BspCNI CTCAG 2 cut(s) 225, 698
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 1 cut(s) 928
BspMI ACCTGC 1 cut(s) 228
BspPI GGATC 6 cut(s) 457, 470, 519, 557, 838, 950
BspTNI GGTCTC 1 cut(s) 963
BsrFI RCCGGY 2 cut(s) 876, 1028
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 615, 856
BssAI RCCGGY 2 cut(s) 876, 1028
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 5 cut(s) 462, 511, 549, 843, 955
BssSI CACGAG 2 cut(s) 553, 602
BssT1I CCWWGG 1 cut(s) 545
Bst2BI CACGAG 2 cut(s) 553, 602
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 3 cut(s) 725, 918, 932
Bst6I CTCTTC 1 cut(s) 546
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 19, 378, 699
BstDEI CTNAG 4 cut(s) 212, 685, 865, 965
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 2 cut(s) 667, 801
BstKTI GATC 5 cut(s) 465, 514, 552, 846, 958
BstMAI GTCTC 1 cut(s) 963
BstMBI GATC 5 cut(s) 462, 511, 549, 843, 955
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 2 cut(s) 444, 924
BstV1I GCAGC 3 cut(s) 565, 754, 1001
BstX2I RGATCY 3 cut(s) 462, 843, 955
BstYI RGATCY 3 cut(s) 462, 843, 955
BsuRI GGCC 4 cut(s) 712, 792, 880, 1032
BtsCI GGATG 2 cut(s) 667, 801
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 750, 849
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 19, 378, 699
Cfr10I RCCGGY 2 cut(s) 876, 1028
Cfr13I GGNCC 1 cut(s) 710
Csp6I GTAC 3 cut(s) 166, 726, 919
CviAII CATG 3 cut(s) 18, 731, 946
CviQI GTAC 3 cut(s) 166, 726, 919
DdeI CTNAG 4 cut(s) 212, 685, 865, 965
DpnI GATC 5 cut(s) 464, 513, 551, 845, 957
DpnII GATC 5 cut(s) 462, 511, 549, 843, 955
DriI GACNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 2 cut(s) 878, 1030
Eam1104I CTCTTC 1 cut(s) 546
Eam1105I GACNNNNNGTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 963
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 545
EcoT22I ATGCAT 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 3 cut(s) 21, 734, 949
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 2 cut(s) 621, 766
FatI CATG 3 cut(s) 17, 730, 945
Fnu4HI GCNGC 3 cut(s) 579, 768, 990
FokI GGATG 2 cut(s) 674, 788
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 579, 768, 990
FspBI CTAG 3 cut(s) 431, 702, 773
GluI GCNGC 3 cut(s) 579, 768, 990
HaeIII GGCC 4 cut(s) 712, 792, 880, 1032
HapII CCGG 3 cut(s) 110, 877, 1029
Hin1II CATG 3 cut(s) 21, 734, 949
HindIII AAGCTT 3 cut(s) 248, 425, 896
HinfI GANTC 4 cut(s) 62, 98, 218, 343
HpaII CCGG 3 cut(s) 110, 877, 1029
HphI GGTGA 4 cut(s) 135, 401, 634, 731
Hpy188I TCNGA 1 cut(s) 688
Hpy188III TCNNGA 3 cut(s) 77, 553, 632
HpyAV CCTTC 6 cut(s) 40, 150, 169, 184, 251, 701
HpyCH4III ACNGT 3 cut(s) 725, 918, 932
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 6 cut(s) 21, 244, 380, 926, 989, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 4 cut(s) 212, 685, 865, 965
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 3 cut(s) 21, 734, 949
Kzo9I GATC 5 cut(s) 462, 511, 549, 843, 955
LmnI GCTCC 2 cut(s) 178, 889
Lsp1109I GCAGC 3 cut(s) 565, 754, 1001
LweI GCATC 1 cut(s) 30
MaeI CTAG 3 cut(s) 431, 702, 773
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 558, 719, 809
MalI GATC 5 cut(s) 464, 513, 551, 845, 957
MboI GATC 5 cut(s) 462, 511, 549, 843, 955
MboII GAAGA 2 cut(s) 61, 533
MflI RGATCY 3 cut(s) 462, 843, 955
MhlI GDGCHC 2 cut(s) 213, 657
MluCI AATT 6 cut(s) 35, 161, 184, 318, 389, 999
MlyI GAGTC 2 cut(s) 71, 92
MmeI TCCRAC 2 cut(s) 490, 672
Mph1103I ATGCAT 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 4 cut(s) 83, 104, 672, 984
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 3 cut(s) 110, 877, 1029
MspR9I CCNGG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 1 cut(s) 1010
NdeII GATC 5 cut(s) 462, 511, 549, 843, 955
NlaIII CATG 3 cut(s) 21, 734, 949
NlaIV GGNNCC 1 cut(s) 464
NmuCI GTSAC 2 cut(s) 719, 809
NsiI ATGCAT 1 cut(s) 23
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 2 cut(s) 218, 343
PkrI GCNGC 3 cut(s) 580, 769, 991
PleI GAGTC 2 cut(s) 70, 92
PpsI GAGTC 2 cut(s) 70, 92
PshBI ATTAAT 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 618
PspEI GGTNACC 1 cut(s) 719
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 710
PstI CTGCAG 1 cut(s) 928
PsuI RGATCY 3 cut(s) 462, 843, 955
RsaI GTAC 3 cut(s) 167, 727, 920
RsaNI GTAC 3 cut(s) 166, 726, 919
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 4 cut(s) 83, 104, 672, 984
SatI GCNGC 3 cut(s) 579, 768, 990
Sau3AI GATC 5 cut(s) 462, 511, 549, 843, 955
Sau96I GGNCC 1 cut(s) 710
SchI GAGTC 2 cut(s) 71, 92
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 2 cut(s) 213, 657
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 2 cut(s) 444, 924
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SphI GCATGC 1 cut(s) 21
Sse9I AATT 6 cut(s) 35, 161, 184, 318, 389, 999
SsiI CCGC 1 cut(s) 887
SspI AATATT 1 cut(s) 977
SspMI CTAG 3 cut(s) 431, 702, 773
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 3 cut(s) 725, 918, 932
TaiI ACGT 1 cut(s) 654
TaqI TCGA 5 cut(s) 128, 631, 737, 783, 994
TasI AATT 6 cut(s) 35, 161, 184, 318, 389, 999
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 218, 343
Tru1I TTAA 4 cut(s) 83, 104, 672, 984
Tru9I TTAA 4 cut(s) 83, 104, 672, 984
TscAI CASTG 2 cut(s) 750, 856
TseFI GTSAC 2 cut(s) 719, 809
TseI GCWGC 3 cut(s) 578, 767, 989
Tsp45I GTSAC 2 cut(s) 719, 809
TspDTI ATGAA 1 cut(s) 498
TspRI CASTG 2 cut(s) 750, 856
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 2 cut(s) 35, 184
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 3 cut(s) 431, 702, 773
Zsp2I ATGCAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.