RCHIOBHM_CHR0C22G0500531
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000416
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGTATCGACAGCAGACAATTGGGACTCATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTATATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAGAAGTTCAGCATGATAATAGATCTGCTCCTGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATCGCCAAGCTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCGGGTAGTAGAGATATTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.48

Weight (kDa)

9.52

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 2 cut(s) 149, 317
AfaI GTAC 2 cut(s) 191, 379
AgsI TTSAA 2 cut(s) 56, 349
AluBI AGCT 5 cut(s) 169, 263, 280, 291, 356
AluI AGCT 5 cut(s) 169, 263, 280, 291, 356
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 109
AoxI GGCC 3 cut(s) 61, 149, 317
ApeKI GCWGC 3 cut(s) 38, 260, 291
AseI ATTAAT 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 377
BbvI GCAGC 3 cut(s) 25, 272, 278
BccI CCATC 2 cut(s) 72, 80
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 226
BisI GCNGC 3 cut(s) 39, 261, 292
BlsI GCNGC 3 cut(s) 40, 262, 293
BmiI GGNNCC 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse118I RCCGGY 2 cut(s) 147, 315
Bse1I ACTGG 2 cut(s) 127, 244
BseGI GGATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 127, 244
BseXI GCAGC 3 cut(s) 25, 272, 278
BshFI GGCC 3 cut(s) 63, 151, 319
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 2 cut(s) 148, 316
BslFI GGGAC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 63, 151, 319
Bso31I GGTCTC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 114, 226
BspACI CCGC 1 cut(s) 158
BspANI GGCC 3 cut(s) 63, 151, 319
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 147, 315
BsrI ACTGG 2 cut(s) 127, 244
BssAI RCCGGY 2 cut(s) 147, 315
BssMI GATC 2 cut(s) 114, 226
Bst4CI ACNGT 2 cut(s) 189, 203
BstC8I GCNNGC 2 cut(s) 282, 354
BstDEI CTNAG 2 cut(s) 136, 236
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 117, 229
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 114, 226
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 25, 272, 278
BstX2I RGATCY 2 cut(s) 114, 226
BstYI RGATCY 2 cut(s) 114, 226
BsuRI GGCC 3 cut(s) 63, 151, 319
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 282, 354
Cfr10I RCCGGY 2 cut(s) 147, 315
Csp6I GTAC 2 cut(s) 190, 378
CviAII CATG 2 cut(s) 29, 217
CviJI RGCY 8 cut(s) 63, 151, 169, 263, 280, 291, 319, 356
CviKI_1 RGCY 8 cut(s) 63, 151, 169, 263, 280, 291, 319, 356
CviQI GTAC 2 cut(s) 190, 378
DdeI CTNAG 2 cut(s) 136, 236
DpnI GATC 2 cut(s) 116, 228
DpnII GATC 2 cut(s) 114, 226
EaeI YGGCCR 2 cut(s) 149, 317
Eco31I GGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 32, 220
FaiI YATR 9 cut(s) 30, 36, 51, 78, 88, 109, 111, 218, 359
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 28, 216
Fnu4HI GCNGC 3 cut(s) 39, 261, 292
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 39, 261, 292
GluI GCNGC 3 cut(s) 39, 261, 292
HaeIII GGCC 3 cut(s) 63, 151, 319
HapII CCGG 2 cut(s) 148, 316
Hin1II CATG 2 cut(s) 32, 220
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 25, 328, 365
HpaII CCGG 2 cut(s) 148, 316
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 189, 203
HpyCH4V TGCA 3 cut(s) 197, 260, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 136, 236
Hsp92II CATG 2 cut(s) 32, 220
KpnI GGTACC 1 cut(s) 381
Kzo9I GATC 2 cut(s) 114, 226
LmnI GCTCC 2 cut(s) 160, 237
Lsp1109I GCAGC 3 cut(s) 25, 272, 278
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 116, 228
MboI GATC 2 cut(s) 114, 226
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 2 cut(s) 114, 226
MluCI AATT 2 cut(s) 18, 397
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 120, 128
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 148, 316
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 2 cut(s) 114, 226
NlaIII CATG 2 cut(s) 32, 220
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 80
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 328, 365
PkrI GCNGC 3 cut(s) 40, 262, 293
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 379
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 2 cut(s) 114, 226
RsaI GTAC 2 cut(s) 191, 379
RsaNI GTAC 2 cut(s) 190, 378
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 39, 261, 292
Sau3AI GATC 2 cut(s) 114, 226
SchI GAGTC 1 cut(s) 19
SetI ASST 5 cut(s) 171, 265, 282, 293, 358
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 2 cut(s) 18, 397
SsiI CCGC 1 cut(s) 158
TaaI ACNGT 2 cut(s) 189, 203
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 18, 397
TfiI GAWTC 2 cut(s) 328, 365
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 38, 260, 291
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 127
VspI ATTAAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.