Rorug07G0098500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000416
Physical Location & Seq
Forward (+)
7770851 .. 7771500
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0098500.1

Sequence Viewer

Length: 456 bp
ATGGATATTGTGAAGGGAAAGTTGGCGAAGAATCTGATGATCAAGGCGTGGAAGAGATGTAGTTTAACAAACCAAAGCAGCAGCAAGCGGAAGAAGAGCAAGGACCGAGTATTGGCTCCGGATGGGTGCTTCTCGGTCTACGTTGGACCAGAGAAGCAACGATTCGTGGTGAAGGTTGAGTTTGCTAACCATCCGTTGTTCAAGGTACTGTTAGAGTATGCTGCATGGGATTATGGATACAGTAGTGGAGGTCCAATTATGCTTCCTTGCGATGTGGAATTGTTCTACAATGTTTTGGCAGCGATGGAGAACAATGTTGATGATGATATGATGAGTACACCGAACGATTTTTTCTTCAAACCTTGCAGCAGTCCAACTCGTCATCTTCGTTTAAATTCGAGCAAGTTTAAGGGCTATGGTGGTGCTTATGTGCTGCTTAGTCCGTCACTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.98

Weight (kDa)

9.26

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 101 3.5e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 2 cut(s) 207, 337
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 202, 358
AjuI GAANNNNNNNTTGG 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 118
ApeKI GCWGC 6 cut(s) 78, 81, 221, 299, 366, 433
ApoI RAATTY 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 103, 146, 251
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 3 cut(s) 103, 146, 251
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BbvI GCAGC 6 cut(s) 90, 93, 208, 311, 378, 420
BccI CCATC 3 cut(s) 116, 198, 298
BciVI GTATCC 1 cut(s) 230
BclI TGATCA 1 cut(s) 39
BfuI GTATCC 1 cut(s) 230
BisI GCNGC 6 cut(s) 79, 82, 222, 300, 367, 434
BlsI GCNGC 6 cut(s) 80, 83, 223, 301, 368, 435
Bme18I GGWCC 3 cut(s) 103, 146, 251
BmgT120I GGNCC 3 cut(s) 103, 146, 251
BmiI GGNNCC 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 118
BseGI GGATG 2 cut(s) 127, 190
BseLI CCNNNNNNNGG 1 cut(s) 112
BseXI GCAGC 6 cut(s) 90, 93, 208, 311, 378, 420
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 89
BssMI GATC 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 210, 242
Bst6I CTCTTC 2 cut(s) 47, 89
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 2 cut(s) 127, 190
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstV1I GCAGC 6 cut(s) 90, 93, 208, 311, 378, 420
BsuI GTATCC 1 cut(s) 230
BtgZI GCGATG 2 cut(s) 285, 317
BtsCI GGATG 2 cut(s) 127, 190
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 103, 146, 251
Csp6I GTAC 2 cut(s) 206, 336
CviAII CATG 1 cut(s) 225
CviJI RGCY 2 cut(s) 116, 414
CviKI_1 RGCY 2 cut(s) 116, 414
CviQI GTAC 2 cut(s) 206, 336
DdeI CTNAG 1 cut(s) 437
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DraI TTTAAA 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 47, 89
EarI CTCTTC 2 cut(s) 47, 89
Eco47I GGWCC 3 cut(s) 103, 146, 251
FaeI CATG 1 cut(s) 228
FaiI YATR 7 cut(s) 219, 226, 234, 260, 329, 417, 429
FatI CATG 1 cut(s) 224
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 79, 82, 222, 300, 367, 434
FokI GGATG 2 cut(s) 134, 177
Fsp4HI GCNGC 6 cut(s) 79, 82, 222, 300, 367, 434
GluI GCNGC 6 cut(s) 79, 82, 222, 300, 367, 434
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 228
HinfI GANTC 2 cut(s) 31, 162
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 139, 338
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 139, 338
HpyAV CCTTC 2 cut(s) 7, 166
HpyCH4III ACNGT 2 cut(s) 210, 242
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 224, 366
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 132, 162
Lsp1109I GCAGC 6 cut(s) 90, 93, 208, 311, 378, 420
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 444
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 6 cut(s) 40, 64, 103, 106, 346, 377
MluCI AATT 3 cut(s) 255, 278, 394
MmeI TCCRAC 2 cut(s) 124, 398
MnlI CCTC 1 cut(s) 242
MroI TCCGGA 1 cut(s) 118
MseI TTAA 4 cut(s) 65, 392, 408, 454
MspI CCGG 1 cut(s) 119
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 2 cut(s) 31, 162
PkrI GCNGC 6 cut(s) 80, 83, 223, 301, 368, 435
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 103, 146, 251
RsaI GTAC 2 cut(s) 207, 337
RsaNI GTAC 2 cut(s) 206, 336
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 65, 392, 408, 454
SatI GCNGC 6 cut(s) 79, 82, 222, 300, 367, 434
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 3 cut(s) 103, 146, 251
SetI ASST 5 cut(s) 144, 177, 207, 253, 364
SinI GGWCC 3 cut(s) 103, 146, 251
Sse9I AATT 3 cut(s) 255, 278, 394
SsiI CCGC 1 cut(s) 88
TaaI ACNGT 2 cut(s) 210, 242
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 398
TaqII GACCGA 2 cut(s) 120, 124
TasI AATT 3 cut(s) 255, 278, 394
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 2 cut(s) 31, 162
Tru1I TTAA 4 cut(s) 65, 392, 408, 454
Tru9I TTAA 4 cut(s) 65, 392, 408, 454
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 6 cut(s) 78, 81, 221, 299, 366, 433
Tsp45I GTSAC 1 cut(s) 444
TspGWI ACGGA 2 cut(s) 183, 432
VpaK11BI GGWCC 3 cut(s) 103, 146, 251
XapI RAATTY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.