pycom06g03780
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000416
Physical Location & Seq
Reverse (-)
4715923 .. 4718604
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03780.3

Sequence Viewer

Length: 1173 bp
ATGAAGTGTTTCTTTCCCTTCAAGGAAAAACACAAGAGCAAAATAGAAGTATCGCAATCCACTCCAGAATTGAGAAACAAAAGCAATTCAAGCAATCCGGCTTTGGATCGCGCGACAAAATCTTCGAGTTCATTGCCATCTCCAAAGAGCATACCAGAGTTGTACAAAGAAAAGGAGCATAATTTGAGAGTTTTCTCCTTCCAAGAGCTGAGGGAAGCAACAAATGGTTTCAGCAGGTCGCTTAAGCTCGGGGAAGGAGGTTTTGGGAGGGTTTATAAAGCAGCAATCAGGCCTTCCGATGGAGGAACGGGCAGTCCGATTTGGGTTGCCATCAAGAAGTTAAACCCTCGTAGTTTACAGGGTCACAAGCAATGGCTTGCAGAAGTTCAATTTCTTGGCGTCGTAAATCACCCGAATTTGGTAAAACTTCTAGGGTACTGTTGTTTAGATGGAGAGAGAGGGATACAAAGGCTGTTGGTGTATGAATTTATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGCCTGCATTGCCTTGGATGACAAGGTTAAAGATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATAAGGGACTCGAAGTCCAGGTAATATATCGAGATTTCAAATCTTCAAATGTGCTATTGGATGAGGAATTCAGGCCAAAGCTCTCAGACTTTGGGCTTGCTAGAGAAGGACCAACGGGTGACCGTTCTCATGTATCAACCTCGGTGGTGGGGACTTATGGATATGCAGCCCCAGAATATATAAAAACAGGCCATCTTTCAACCAGTAGTGACTTATGGAGTTTCGGTGTGGTACTGTACGAGATCCTAACAGGCAGGCGTGTCTTAGACAAGAACCGCCCCATATCAGAACAGAAGCTTCTTTACTGGGTTAGACAGTTCCCCGCTGACAGTAAAAGGTTCAGCATGGTAATAGATCCCCTCCTGAGAGACCAGTATTCTCTTACTGCAGCTCAGAATGTTGCCAAGTTGGCCGATAGCTGTCTGAACAATAACGCAAAGGACCGGCCAACCATGAGTCAGGTGGTAGAGGTGTTAGAGCAAGCTCTACAAGATTCACAAGGGAGCACCAATTCTTTTAAGAGAAGTTTTGAGGTCTCTACATCTAAATTGGCGAAGCGGAAACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

391

Amino Acids

43.92

Weight (kDa)

9.66

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 225
AccII CGCG 2 cut(s) 111, 113
AciI CCGC 3 cut(s) 877, 924, 1159
AclWI GGATC 3 cut(s) 114, 838, 950
AcoI YGGCCR 2 cut(s) 1011, 1046
AcsI RAATTY 3 cut(s) 415, 485, 668
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 4 cut(s) 164, 437, 834, 839
AfiI CCNNNNNNNGG 2 cut(s) 299, 418
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 7 cut(s) 22, 90, 389, 523, 640, 648, 801
AhdI GACNNNNNGTC 1 cut(s) 614
AjnI CCWGG 1 cut(s) 618
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AloI GAACNNNNNNTCC 2 cut(s) 298, 330
AluBI AGCT 8 cut(s) 208, 247, 504, 682, 898, 992, 1020, 1085
AluI AGCT 8 cut(s) 208, 247, 504, 682, 898, 992, 1020, 1085
Alw21I GWGCWC 1 cut(s) 1109
Alw26I GTCTC 2 cut(s) 963, 1141
AlwI GGATC 3 cut(s) 114, 838, 950
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 5 cut(s) 290, 674, 790, 1011, 1046
ApeKI GCWGC 4 cut(s) 281, 578, 767, 989
ApoI RAATTY 3 cut(s) 415, 485, 668
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 710, 1042
AsuHPI GGTGA 2 cut(s) 401, 731
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 2 cut(s) 710, 1042
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BarI GAAGNNNNNNTAC 2 cut(s) 887, 919
Bbv12I GWGCWC 1 cut(s) 1109
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 4 cut(s) 293, 565, 779, 1001
BccI CCATC 5 cut(s) 145, 293, 338, 443, 801
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 963, 1141
BfaI CTAG 2 cut(s) 431, 702
BfmI CTRYAG 1 cut(s) 987
BfrI CTTAAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 225
BfuI GTATCC 1 cut(s) 456
BglI GCCNNNNNGGC 1 cut(s) 1010
BisI GCNGC 4 cut(s) 282, 579, 768, 990
BlsI GCNGC 4 cut(s) 283, 580, 769, 991
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 2 cut(s) 710, 1042
BmeRI GACNNNNNGTC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 710, 1042
BmrFI CCNGG 1 cut(s) 620
BmrI ACTGGG 1 cut(s) 916
BmuI ACTGGG 1 cut(s) 916
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 399
BsaI GGTCTC 2 cut(s) 963, 1141
BsaJI CCNNGG 2 cut(s) 545, 741
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 418
Bse118I RCCGGY 1 cut(s) 1044
Bse1I ACTGG 3 cut(s) 804, 911, 973
Bse3DI GCAATG 3 cut(s) 131, 377, 539
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 545, 741
BseGI GGATG 2 cut(s) 555, 667
BseLI CCNNNNNNNGG 2 cut(s) 299, 418
BseMI GCAATG 3 cut(s) 131, 377, 539
BseMII CTCAG 4 cut(s) 200, 699, 956, 1007
BseNI ACTGG 3 cut(s) 804, 911, 973
BseXI GCAGC 4 cut(s) 293, 565, 779, 1001
Bsh1236I CGCG 2 cut(s) 111, 113
BshFI GGCC 5 cut(s) 292, 676, 792, 1013, 1048
BsiHKAI GWGCWC 1 cut(s) 1109
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 98, 1045
BslFI GGGAC 2 cut(s) 621, 766
BslI CCNNNNNNNGG 2 cut(s) 299, 418
BsmAI GTCTC 2 cut(s) 963, 1141
BsmFI GGGAC 2 cut(s) 621, 766
BsnI GGCC 5 cut(s) 292, 676, 792, 1013, 1048
Bso31I GGTCTC 2 cut(s) 963, 1141
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 1109
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 106, 511, 843, 955
BspACI CCGC 3 cut(s) 877, 924, 1159
BspANI GGCC 5 cut(s) 292, 676, 792, 1013, 1048
BspCNI CTCAG 4 cut(s) 201, 698, 957, 1006
BspFNI CGCG 2 cut(s) 111, 113
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 1 cut(s) 225
BspPI GGATC 3 cut(s) 114, 838, 950
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 963, 1141
BsrDI GCAATG 3 cut(s) 131, 377, 539
BsrFI RCCGGY 1 cut(s) 1044
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 3 cut(s) 804, 911, 973
BssAI RCCGGY 1 cut(s) 1044
BssECI CCNNGG 2 cut(s) 545, 741
BssMI GATC 4 cut(s) 106, 511, 843, 955
BssNI GRCGYC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 5 cut(s) 440, 725, 837, 918, 932
BstACI GRCGYC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 5 cut(s) 378, 537, 699, 857, 1083
BstDEI CTNAG 6 cut(s) 209, 505, 685, 865, 965, 993
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 2 cut(s) 555, 667
BstFNI CGCG 2 cut(s) 111, 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 4 cut(s) 109, 514, 846, 958
BstMAI GTCTC 2 cut(s) 963, 1141
BstMBI GATC 4 cut(s) 106, 511, 843, 955
BstMWI GCNNNNNNNGC 4 cut(s) 90, 536, 541, 1010
BstNI CCWGG 1 cut(s) 620
BstPI GGTNACC 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 2 cut(s) 111, 113
BstV1I GCAGC 4 cut(s) 293, 565, 779, 1001
BstX2I RGATCY 2 cut(s) 843, 955
BstYI RGATCY 2 cut(s) 843, 955
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 5 cut(s) 292, 676, 792, 1013, 1048
BtsCI GGATG 2 cut(s) 555, 667
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 5 cut(s) 378, 537, 699, 857, 1083
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 1044
Cfr13I GGNCC 2 cut(s) 710, 1042
CseI GACGC 1 cut(s) 388
Csp6I GTAC 4 cut(s) 163, 436, 833, 838
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 3 cut(s) 731, 946, 1054
CviQI GTAC 4 cut(s) 163, 436, 833, 838
DdeI CTNAG 6 cut(s) 209, 505, 685, 865, 965, 993
DpnI GATC 4 cut(s) 108, 513, 845, 957
DpnII GATC 4 cut(s) 106, 511, 843, 955
DriI GACNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 2 cut(s) 1011, 1046
Eam1105I GACNNNNNGTC 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 545
Eco147I AGGCCT 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 963, 1141
Eco47I GGWCC 2 cut(s) 710, 1042
Eco88I CYCGRG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 719
EcoO65I GGTNACC 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 3 cut(s) 734, 949, 1057
FalI AAGNNNNNCTT 3 cut(s) 28, 501, 533
FaqI GGGAC 2 cut(s) 621, 766
FatI CATG 3 cut(s) 730, 945, 1053
FauI CCCGC 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 282, 579, 768, 990
FokI GGATG 2 cut(s) 562, 674
Fsp4HI GCNGC 4 cut(s) 282, 579, 768, 990
FspBI CTAG 2 cut(s) 431, 702
GlaI GCGC 1 cut(s) 112
GluI GCNGC 4 cut(s) 282, 579, 768, 990
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 5 cut(s) 292, 676, 792, 1013, 1048
HapII CCGG 2 cut(s) 98, 1045
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 3 cut(s) 734, 949, 1057
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 2 cut(s) 502, 896
HinfI GANTC 3 cut(s) 609, 1057, 1094
HpaII CCGG 2 cut(s) 98, 1045
HphI GGTGA 2 cut(s) 401, 731
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 6 cut(s) 298, 318, 688, 889, 996, 1026
Hpy188III TCNNGA 4 cut(s) 65, 334, 632, 964
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 5 cut(s) 28, 208, 248, 303, 701
HpyCH4III ACNGT 5 cut(s) 440, 725, 837, 918, 932
HpyCH4V TGCA 4 cut(s) 380, 539, 767, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 536, 541, 1010
HpyF3I CTNAG 6 cut(s) 209, 505, 685, 865, 965, 993
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 3 cut(s) 734, 949, 1057
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 4 cut(s) 106, 511, 843, 955
LmnI GCTCC 2 cut(s) 175, 1104
Lsp1109I GCAGC 4 cut(s) 293, 565, 779, 1001
MaeI CTAG 2 cut(s) 431, 702
MaeIII GTNAC 3 cut(s) 362, 719, 809
MalI GATC 4 cut(s) 108, 513, 845, 957
MboI GATC 4 cut(s) 106, 511, 843, 955
MboII GAAGA 3 cut(s) 114, 521, 636
MflI RGATCY 2 cut(s) 843, 955
MhlI GDGCHC 1 cut(s) 1109
MluCI AATT 9 cut(s) 68, 85, 181, 389, 415, 485, 668, 1111, 1148
MlyI GAGTC 2 cut(s) 603, 1066
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 243, 341, 560, 1119
MspA1I CMGCKG 1 cut(s) 926
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 98, 1045
MspR9I CCNGG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 2 cut(s) 111, 113
MwoI GCNNNNNNNGC 4 cut(s) 90, 536, 541, 1010
NdeII GATC 4 cut(s) 106, 511, 843, 955
NlaIII CATG 3 cut(s) 734, 949, 1057
NmuCI GTSAC 3 cut(s) 362, 719, 809
PceI AGGCCT 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 1094
PkrI GCNGC 4 cut(s) 283, 580, 769, 991
PleI GAGTC 2 cut(s) 603, 1065
PpsI GAGTC 2 cut(s) 603, 1065
PsiI TTATAA 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 618
PspEI GGTNACC 1 cut(s) 719
PspGI CCWGG 1 cut(s) 618
PspPI GGNCC 2 cut(s) 710, 1042
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 2 cut(s) 843, 955
RsaI GTAC 4 cut(s) 164, 437, 834, 839
RsaNI GTAC 4 cut(s) 163, 436, 833, 838
SaqAI TTAA 4 cut(s) 243, 341, 560, 1119
SatI GCNGC 4 cut(s) 282, 579, 768, 990
Sau3AI GATC 4 cut(s) 106, 511, 843, 955
Sau96I GGNCC 2 cut(s) 710, 1042
SchI GAGTC 2 cut(s) 603, 1066
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 1 cut(s) 1109
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 2 cut(s) 710, 1042
SmlI CTYRAG 2 cut(s) 242, 582
SmoI CTYRAG 2 cut(s) 242, 582
Sse9I AATT 9 cut(s) 68, 85, 181, 389, 415, 485, 668, 1111, 1148
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 3 cut(s) 877, 924, 1159
SspMI CTAG 2 cut(s) 431, 702
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 5 cut(s) 440, 725, 837, 918, 932
TaqI TCGA 3 cut(s) 125, 612, 631
TasI AATT 9 cut(s) 68, 85, 181, 389, 415, 485, 668, 1111, 1148
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 1094
Tru1I TTAA 4 cut(s) 243, 341, 560, 1119
Tru9I TTAA 4 cut(s) 243, 341, 560, 1119
TseFI GTSAC 3 cut(s) 362, 719, 809
TseI GCWGC 4 cut(s) 281, 578, 767, 989
Tsp45I GTSAC 3 cut(s) 362, 719, 809
TspDTI ATGAA 3 cut(s) 17, 120, 498
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 710, 1042
XapI RAATTY 3 cut(s) 415, 485, 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 431, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.