Rorug07G0096700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000416
Physical Location & Seq
Reverse (-)
7601143 .. 7602865
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0096700.1

Sequence Viewer

Length: 852 bp
ATGGGGGGCCAAAATTCAAAGCCCACCCCAGAAGCCGAAGCCATGCCTCCTAGAATACGTCCACTCCTACTGCGAAAGTATGAGGAGATCAGAAACCGGATAAGGTCAAGAAGACTAAGACCTGATGCTGCTCTCTCCAAGAAACAACTACTTAAGCCTGAGGATAATGAAGAGGAGGTGGATAATGAAGAGTTTCAATCGTTACAACCTTCGCCTGAAAATAGTTTAGTATCTCCAAAGGTACAAACAATACCGGAGAAGAATAGTTCAAAAGTTGCACCAGTTTTGCTAGATCATAATGAGATTAAGGACCAAAAAAATAAGGAGGAAAATCAATTAGAGAACAGCATTGAAGAACATAAAGAGAAAGAAAGTGGGAAAGAGGCAAAGGTTGTGCCTGTGTACATAGGAGGGGTTTTTACATTGGAGCATGCCGCAGATGGAGAGGAAGAGAATGAAGATCATGAAGATATGCGGAGTATCAACTACCAAATGTTTATGTGTCCTTCATCGCCAAGTTTCCGAGTTTATTGCCAAGAACCAATGGAATTTGAAAAGGAATTGGAAAAGGAAACTGACAAGGATGCAAGTAAATATGACAAAACTTACAGCACAGTTGAGGATATCAACCACAAAAAAACGGATAGTACCGACAGCAGTGTTGATAGCATAGCTGATAAGAATGAAGGCCAGGACACCAAAACAAAGAAGAAAGCAAGGAGAAGAAGAATGAAAAATCCATTCCAAATGGGAGGACCAGCAGACTGTTCTGTAAAGAATCTGTTGAATGTTAGAGGTTGCACTGGCCACGACAGAGCCACCCTTCTTGCTGAGAAATCTGCAGCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

283

Amino Acids

32.24

Weight (kDa)

5.51

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 435, 475
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 2 cut(s) 13, 548
AfaI GTAC 3 cut(s) 243, 404, 649
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 6 cut(s) 18, 197, 270, 353, 554, 787
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 2 cut(s) 674, 845
AluI AGCT 2 cut(s) 674, 845
AoxI GGCC 3 cut(s) 7, 688, 805
ApeKI GCWGC 2 cut(s) 128, 842
ApoI RAATTY 2 cut(s) 13, 548
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 7, 310, 755
AvaII GGWCC 2 cut(s) 310, 755
AxyI CCTNAGG 1 cut(s) 159
BalI TGGCCA 1 cut(s) 807
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 434
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 1 cut(s) 692
BfaI CTAG 2 cut(s) 51, 290
BfmI CTRYAG 1 cut(s) 840
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 129, 435, 843
BlsI GCNGC 3 cut(s) 130, 436, 844
Bme1390I CCNGG 1 cut(s) 692
Bme18I GGWCC 2 cut(s) 310, 755
BmgT120I GGNCC 3 cut(s) 7, 310, 755
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 692
BmsI GCATC 2 cut(s) 115, 574
BpiI GAAGAC 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 849
BsaWI WCCGGW 2 cut(s) 96, 253
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 2 cut(s) 281, 808
Bse21I CCTNAGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 692
BseGI GGATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 150, 822
BseNI ACTGG 2 cut(s) 281, 808
BseRI GAGGAG 2 cut(s) 98, 188
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 3 cut(s) 9, 690, 807
BsiSI CCGG 2 cut(s) 97, 254
BsnI GGCC 3 cut(s) 9, 690, 807
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 3 cut(s) 87, 292, 460
BspACI CCGC 2 cut(s) 435, 475
BspANI GGCC 3 cut(s) 9, 690, 807
BspCNI CTCAG 2 cut(s) 151, 823
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 844
BspTI CTTAAG 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 2 cut(s) 281, 808
BssMI GATC 3 cut(s) 87, 292, 460
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 616, 767
Bst6I CTCTTC 3 cut(s) 165, 183, 444
BstAFI CTTAAG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 116, 159, 831
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 3 cut(s) 90, 295, 463
BstMBI GATC 3 cut(s) 87, 292, 460
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 690
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 3 cut(s) 9, 690, 807
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 664, 801
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 7, 310, 755
Csp6I GTAC 3 cut(s) 242, 403, 648
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviAII CATG 3 cut(s) 43, 431, 464
CviQI GTAC 3 cut(s) 242, 403, 648
DdeI CTNAG 3 cut(s) 116, 159, 831
DpnI GATC 3 cut(s) 89, 294, 462
DpnII GATC 3 cut(s) 87, 292, 460
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 3 cut(s) 165, 183, 444
EarI CTCTTC 3 cut(s) 165, 183, 444
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 310, 755
Eco81I CCTNAGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 690
EcoRV GATATC 1 cut(s) 625
FaeI CATG 3 cut(s) 46, 434, 467
FatI CATG 3 cut(s) 42, 430, 463
Fnu4HI GCNGC 3 cut(s) 129, 435, 843
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 3 cut(s) 129, 435, 843
FspBI CTAG 2 cut(s) 51, 290
GluI GCNGC 3 cut(s) 129, 435, 843
HaeIII GGCC 3 cut(s) 9, 690, 807
HapII CCGG 2 cut(s) 97, 254
Hin1II CATG 3 cut(s) 46, 434, 467
HinfI GANTC 1 cut(s) 778
HpaII CCGG 2 cut(s) 97, 254
Hpy166II GTNNAC 2 cut(s) 62, 403
Hpy188I TCNGA 2 cut(s) 92, 524
Hpy188III TCNNGA 2 cut(s) 108, 464
Hpy8I GTNNAC 2 cut(s) 62, 403
HpyAV CCTTC 4 cut(s) 219, 516, 680, 833
HpyCH4III ACNGT 2 cut(s) 616, 767
HpyCH4IV ACGT 2 cut(s) 58, 848
HpyCH4V TGCA 4 cut(s) 278, 587, 801, 842
HpyF3I CTNAG 3 cut(s) 116, 159, 831
HpySE526I ACGT 2 cut(s) 58, 848
Hsp92II CATG 3 cut(s) 46, 434, 467
Kzo9I GATC 3 cut(s) 87, 292, 460
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 115, 574
MaeI CTAG 2 cut(s) 51, 290
MaeII ACGT 2 cut(s) 58, 848
MaeIII GTNAC 1 cut(s) 201
MalI GATC 3 cut(s) 89, 294, 462
MboI GATC 3 cut(s) 87, 292, 460
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 4 cut(s) 13, 335, 548, 560
MluNI TGGCCA 1 cut(s) 807
Mox20I TGGCCA 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 807
MseI TTAA 2 cut(s) 153, 306
Msp20I TGGCCA 1 cut(s) 807
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 2 cut(s) 97, 254
MspR9I CCNGG 1 cut(s) 692
MvaI CCWGG 1 cut(s) 692
NdeII GATC 3 cut(s) 87, 292, 460
NlaIII CATG 3 cut(s) 46, 434, 467
NlaIV GGNNCC 1 cut(s) 8
NspI RCATGY 1 cut(s) 434
PaeI GCATGC 1 cut(s) 434
PagI TCATGA 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 778
PkrI GCNGC 3 cut(s) 130, 436, 844
Ppu21I YACGTR 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 690
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 3 cut(s) 7, 310, 755
PstI CTGCAG 1 cut(s) 844
RsaI GTAC 3 cut(s) 243, 404, 649
RsaNI GTAC 3 cut(s) 242, 403, 648
SaqAI TTAA 2 cut(s) 153, 306
SatI GCNGC 3 cut(s) 129, 435, 843
Sau3AI GATC 3 cut(s) 87, 292, 460
Sau96I GGNCC 3 cut(s) 7, 310, 755
ScrFI CCNGG 1 cut(s) 692
SfaNI GCATC 2 cut(s) 115, 574
SfcI CTRYAG 1 cut(s) 840
SinI GGWCC 2 cut(s) 310, 755
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SphI GCATGC 1 cut(s) 434
Sse9I AATT 4 cut(s) 13, 335, 548, 560
SsiI CCGC 2 cut(s) 435, 475
SspMI CTAG 2 cut(s) 51, 290
StyD4I CCNGG 1 cut(s) 690
TaaI ACNGT 2 cut(s) 616, 767
TaiI ACGT 2 cut(s) 61, 851
TasI AATT 4 cut(s) 13, 335, 548, 560
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 2 cut(s) 153, 306
Tru9I TTAA 2 cut(s) 153, 306
TscAI CASTG 2 cut(s) 664, 808
TseI GCWGC 2 cut(s) 128, 842
TspDTI ATGAA 7 cut(s) 183, 201, 471, 480, 498, 699, 746
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 2 cut(s) 664, 808
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 2 cut(s) 310, 755
XapI RAATTY 2 cut(s) 13, 548
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 51, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.