Rroxscaffold_3G00251410
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000416
Physical Location & Seq
Reverse (-)
45299653 .. 45304367
4715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251410.1

Sequence Viewer

Length: 732 bp
ATGGAGAAAGAGGGATCCAACGGCTATTGGGTGTATGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAATAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTAGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCCAAGGGTGACCGTACTCATGTATCGACAGCTGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACGGGCCATCTTTCCATCCATAGTGACTTGTGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACATCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAATTCAGCATGATAATAGATCCACTTCTGAGAGACCAGTATCCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACATGATTCAGAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAAATGGGTAGAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

27.66

Weight (kDa)

9.13

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 208 4.5e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 8 - 210 2.2e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 659
AciI CCGC 1 cut(s) 440
AclWI GGATC 5 cut(s) 9, 22, 110, 391, 503
AcoI YGGCCR 2 cut(s) 431, 599
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 3 cut(s) 280, 473, 661
AfiI CCNNNNNNNGG 1 cut(s) 726
AgsI TTSAA 5 cut(s) 76, 88, 193, 338, 631
AhdI GACNNNNNGTC 1 cut(s) 167
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 7 cut(s) 57, 235, 296, 451, 545, 573, 638
AluI AGCT 7 cut(s) 57, 235, 296, 451, 545, 573, 638
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 5 cut(s) 9, 22, 110, 391, 503
AoxI GGCC 4 cut(s) 263, 343, 431, 599
ApaI GGGCCC 1 cut(s) 267
ApeKI GCWGC 4 cut(s) 131, 320, 542, 573
ApoI RAATTY 1 cut(s) 491
AseI ATTAAT 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 659
AspS9I GGNCC 3 cut(s) 263, 264, 343
AsuHPI GGTGA 2 cut(s) 187, 284
BaeGI GKGCMC 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 267
BauI CACGAG 2 cut(s) 106, 155
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 118, 307, 554, 560
BccI CCATC 2 cut(s) 354, 362
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 1 cut(s) 540
BglI GCCNNNNNGGC 1 cut(s) 563
BglII AGATCT 1 cut(s) 624
BisI GCNGC 4 cut(s) 132, 321, 543, 574
BlsI GCNGC 4 cut(s) 133, 322, 544, 575
Bme1390I CCNGG 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 263, 264, 343
BmiI GGNNCC 3 cut(s) 16, 265, 661
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 698
BmuI ACTGGG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 98, 267
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 726
Bse118I RCCGGY 1 cut(s) 597
Bse1I ACTGG 3 cut(s) 168, 409, 526
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 98, 267
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 252, 509
BseNI ACTGG 3 cut(s) 168, 409, 526
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 4 cut(s) 118, 307, 554, 560
BshFI GGCC 4 cut(s) 265, 345, 433, 601
BshNI GGYRCC 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 2 cut(s) 174, 319
BslI CCNNNNNNNGG 1 cut(s) 726
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 2 cut(s) 174, 319
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 4 cut(s) 265, 345, 433, 601
Bso31I GGTCTC 1 cut(s) 516
Bsp120I GGGCCC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 210, 267
Bsp143I GATC 6 cut(s) 14, 64, 102, 396, 508, 624
BspACI CCGC 1 cut(s) 440
BspANI GGCC 4 cut(s) 265, 345, 433, 601
BspCNI CTCAG 2 cut(s) 251, 510
BspLI GGNNCC 3 cut(s) 16, 265, 661
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 5 cut(s) 9, 22, 110, 391, 503
BspT107I GGYRCC 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 597
BsrI ACTGG 3 cut(s) 168, 409, 526
BssAI RCCGGY 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 98, 267
BssMI GATC 6 cut(s) 14, 64, 102, 396, 508, 624
BssSI CACGAG 2 cut(s) 106, 155
BssT1I CCWWGG 2 cut(s) 98, 267
Bst2BI CACGAG 2 cut(s) 106, 155
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 3 cut(s) 278, 471, 485
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 252, 636
BstDEI CTNAG 5 cut(s) 58, 211, 238, 418, 518
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 6 cut(s) 17, 67, 105, 399, 511, 627
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 6 cut(s) 14, 64, 102, 396, 508, 624
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 267
BstV1I GCAGC 4 cut(s) 118, 307, 554, 560
BstX2I RGATCY 4 cut(s) 14, 396, 508, 624
BstYI RGATCY 4 cut(s) 14, 396, 508, 624
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 4 cut(s) 265, 345, 433, 601
BtsCI GGATG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 252, 636
Cfr10I RCCGGY 1 cut(s) 597
Cfr13I GGNCC 3 cut(s) 263, 264, 343
Csp6I GTAC 3 cut(s) 279, 472, 660
CviAII CATG 3 cut(s) 284, 499, 644
CviQI GTAC 3 cut(s) 279, 472, 660
DdeI CTNAG 5 cut(s) 58, 211, 238, 418, 518
DpnI GATC 6 cut(s) 16, 66, 104, 398, 510, 626
DpnII GATC 6 cut(s) 14, 64, 102, 396, 508, 624
DriI GACNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 2 cut(s) 431, 599
Eam1104I CTCTTC 1 cut(s) 99
Eam1105I GACNNNNNGTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 98, 267
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 516
Eco91I GGTNACC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 98, 267
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 2 cut(s) 98, 267
FaeI CATG 3 cut(s) 287, 502, 647
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 174, 319
FatI CATG 3 cut(s) 283, 498, 643
Fnu4HI GCNGC 4 cut(s) 132, 321, 543, 574
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 4 cut(s) 132, 321, 543, 574
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 132, 321, 543, 574
HaeIII GGCC 4 cut(s) 265, 345, 433, 601
HapII CCGG 1 cut(s) 598
Hin1II CATG 3 cut(s) 287, 502, 647
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 2 cut(s) 610, 647
HpaII CCGG 1 cut(s) 598
HphI GGTGA 2 cut(s) 187, 284
Hpy188I TCNGA 4 cut(s) 241, 519, 549, 652
Hpy188III TCNNGA 3 cut(s) 106, 185, 628
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 3 cut(s) 278, 471, 485
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 479, 542, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 5 cut(s) 58, 211, 238, 418, 518
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 287, 502, 647
KpnI GGTACC 1 cut(s) 663
Kzo9I GATC 6 cut(s) 14, 64, 102, 396, 508, 624
LmnI GCTCC 2 cut(s) 54, 442
Lsp1109I GCAGC 4 cut(s) 118, 307, 554, 560
LweI GCATC 1 cut(s) 698
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 111, 272, 362
MalI GATC 6 cut(s) 16, 66, 104, 398, 510, 626
MboI GATC 6 cut(s) 14, 64, 102, 396, 508, 624
MboII GAAGA 2 cut(s) 74, 86
MflI RGATCY 4 cut(s) 14, 396, 508, 624
MhlI GDGCHC 2 cut(s) 210, 267
MluCI AATT 3 cut(s) 491, 552, 679
MmeI TCCRAC 2 cut(s) 42, 225
MnlI CCTC 9 cut(s) 4, 102, 102, 151, 208, 211, 402, 410, 720
MseI TTAA 2 cut(s) 225, 537
MspA1I CMGCKG 2 cut(s) 296, 440
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeII GATC 6 cut(s) 14, 64, 102, 396, 508, 624
NlaIII CATG 3 cut(s) 287, 502, 647
NlaIV GGNNCC 3 cut(s) 16, 265, 661
NmuCI GTSAC 2 cut(s) 272, 362
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 610, 647
PkrI GCNGC 4 cut(s) 133, 322, 544, 575
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 3 cut(s) 16, 265, 661
PspOMI GGGCCC 1 cut(s) 263
PspPI GGNCC 3 cut(s) 263, 264, 343
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 4 cut(s) 14, 396, 508, 624
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 3 cut(s) 280, 473, 661
RsaNI GTAC 3 cut(s) 279, 472, 660
SaqAI TTAA 2 cut(s) 225, 537
SatI GCNGC 4 cut(s) 132, 321, 543, 574
Sau3AI GATC 6 cut(s) 14, 64, 102, 396, 508, 624
Sau96I GGNCC 3 cut(s) 263, 264, 343
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 210, 267
SfaNI GCATC 1 cut(s) 698
SfcI CTRYAG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 3 cut(s) 491, 552, 679
SsiI CCGC 1 cut(s) 440
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 2 cut(s) 98, 267
TaaI ACNGT 3 cut(s) 278, 471, 485
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 184, 290
TasI AATT 3 cut(s) 491, 552, 679
TfiI GAWTC 2 cut(s) 610, 647
Tru1I TTAA 2 cut(s) 225, 537
Tru9I TTAA 2 cut(s) 225, 537
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 272, 362
TseI GCWGC 4 cut(s) 131, 320, 542, 573
Tsp45I GTSAC 2 cut(s) 272, 362
TspDTI ATGAA 2 cut(s) 51, 623
TspRI CASTG 1 cut(s) 409
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 491
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.