RchiOBHm_Chr7g0206981
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
24454163 .. 24455456
1294 bp
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UTR
Exon/CDS
Intron
PRQ18524

Sequence Viewer

Length: 342 bp
ATGGTTCAATTTCTTGGTGTGTTAAATCACCCAAATCTAGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATGTGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGCTCGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGTTACATACATTGTGATATATCGAGATTTCAAATCCTCCAATTTGCTCTTGGATGAGGACTTTAAGCCGAAGCACTCAGACTTTGGGCTTGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.82

Weight (kDa)

9.1

Isoelectric Point (pI)

20.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 113 1.1e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 113 9e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 76, 89, 176
AgsI TTSAA 4 cut(s) 8, 142, 154, 274
AhdI GACNNNNNGTC 1 cut(s) 237
AluBI AGCT 3 cut(s) 46, 123, 206
AluI AGCT 3 cut(s) 46, 123, 206
AlwI GGATC 3 cut(s) 76, 89, 176
ApeKI GCWGC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BauI CACGAG 2 cut(s) 172, 225
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 104
BfaI CTAG 3 cut(s) 38, 50, 336
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmeRI GACNNNNNGTC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 238, 242
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 238, 242
BseXI GCAGC 1 cut(s) 184
BslFI GGGAC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 81, 130, 168
BspCNI CTCAG 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 3 cut(s) 76, 89, 176
BsrI ACTGG 2 cut(s) 238, 242
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 81, 130, 168
BssSI CACGAG 2 cut(s) 172, 225
BssT1I CCWWGG 1 cut(s) 164
Bst2BI CACGAG 2 cut(s) 172, 225
Bst6I CTCTTC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 124, 319
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 3 cut(s) 84, 133, 171
BstMBI GATC 3 cut(s) 81, 130, 168
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BtsCI GGATG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 333
CviJI RGCY 7 cut(s) 46, 91, 123, 206, 216, 310, 331
CviKI_1 RGCY 7 cut(s) 46, 91, 123, 206, 216, 310, 331
DdeI CTNAG 2 cut(s) 124, 319
DpnI GATC 3 cut(s) 83, 132, 170
DpnII GATC 3 cut(s) 81, 130, 168
DriI GACNNNNNGTC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 165
Eam1105I GACNNNNNGTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaiI YATR 6 cut(s) 65, 100, 108, 110, 250, 262
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 38, 50, 336
GluI GCNGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 44
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 210, 322
Hpy188III TCNNGA 2 cut(s) 172, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 124, 319
Kzo9I GATC 3 cut(s) 81, 130, 168
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 3 cut(s) 130, 219, 255
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 3 cut(s) 38, 50, 336
MaeIII GTNAC 2 cut(s) 177, 244
MalI GATC 3 cut(s) 83, 132, 170
MboI GATC 3 cut(s) 81, 130, 168
MboII GAAGA 2 cut(s) 140, 152
MflI RGATCY 1 cut(s) 81
MluCI AATT 2 cut(s) 8, 283
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 6 cut(s) 71, 168, 168, 221, 289, 292
MseI TTAA 2 cut(s) 23, 306
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 3 cut(s) 81, 130, 168
NlaIV GGNNCC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 81
SaqAI TTAA 2 cut(s) 23, 306
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 81, 130, 168
SetI ASST 4 cut(s) 48, 125, 179, 208
SfcI CTRYAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 8, 283
SspMI CTAG 3 cut(s) 38, 50, 336
StyI CCWWGG 1 cut(s) 164
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 8, 283
Tru1I TTAA 2 cut(s) 23, 306
Tru9I TTAA 2 cut(s) 23, 306
TseI GCWGC 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 3 cut(s) 38, 50, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.