RchiOBHm_Chr7g0207151
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24576215 .. 24578045
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18538

Sequence Viewer

Length: 759 bp
ATGGAGAAAGAGGGATCCAATTACCGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATTATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATTTACACGAGGGACTGGAAGTCCAGTTACATAGATTGGTGGAAACTGTCACTTCAGTAACTGTCCATTATCTTGATGTATTCTGTGATATATCAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCATATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTGTGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTTAGCATGATAATAGATCCACTCCAGAGAGACCAATATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACTAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAGAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

252

Amino Acids

28.79

Weight (kDa)

9.07

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 217 3.4e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 219 4.7e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 467
AclWI GGATC 5 cut(s) 9, 22, 113, 418, 530
AcoI YGGCCR 2 cut(s) 458, 626
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 3 cut(s) 340, 500, 688
AfiI CCNNNNNNNGG 3 cut(s) 24, 31, 753
AgsI TTSAA 5 cut(s) 79, 91, 253, 365, 658
AhdI GACNNNNNGTC 1 cut(s) 170
AluBI AGCT 6 cut(s) 60, 295, 478, 572, 600, 665
AluI AGCT 6 cut(s) 60, 295, 478, 572, 600, 665
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 543
AlwI GGATC 5 cut(s) 9, 22, 113, 418, 530
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 4 cut(s) 323, 370, 458, 626
ApeKI GCWGC 3 cut(s) 134, 569, 600
AseI ATTAAT 1 cut(s) 564
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 344
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BamHI GGATCC 1 cut(s) 14
BarI GAAGNNNNNNTAC 2 cut(s) 162, 194
BauI CACGAG 2 cut(s) 109, 158
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 121, 581, 587
BccI CCATC 2 cut(s) 381, 389
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 504
BglI GCCNNNNNGGC 1 cut(s) 590
BglII AGATCT 1 cut(s) 651
BisI GCNGC 3 cut(s) 135, 570, 601
BlsI GCNGC 3 cut(s) 136, 571, 602
BmeRI GACNNNNNGTC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 725
BmuI ACTGGG 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 31, 753
Bse118I RCCGGY 3 cut(s) 24, 456, 624
Bse1I ACTGG 3 cut(s) 171, 175, 436
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 2 cut(s) 280, 381
BseLI CCNNNNNNNGG 3 cut(s) 24, 31, 753
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 171, 175, 436
BseXI GCAGC 3 cut(s) 121, 581, 587
BshFI GGCC 4 cut(s) 325, 372, 460, 628
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 3 cut(s) 25, 457, 625
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 24, 31, 753
BsmAI GTCTC 1 cut(s) 543
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 4 cut(s) 325, 372, 460, 628
Bso31I GGTCTC 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 5 cut(s) 14, 105, 423, 535, 651
BspACI CCGC 1 cut(s) 467
BspANI GGCC 4 cut(s) 325, 372, 460, 628
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 5 cut(s) 9, 22, 113, 418, 530
BspTNI GGTCTC 1 cut(s) 543
BsrFI RCCGGY 3 cut(s) 24, 456, 624
BsrI ACTGG 3 cut(s) 171, 175, 436
BssAI RCCGGY 3 cut(s) 24, 456, 624
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 5 cut(s) 14, 105, 423, 535, 651
BssSI CACGAG 2 cut(s) 109, 158
BssT1I CCWWGG 1 cut(s) 101
Bst2BI CACGAG 2 cut(s) 109, 158
Bst4CI ACNGT 5 cut(s) 199, 214, 338, 498, 512
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 312, 663
BstDEI CTNAG 3 cut(s) 61, 298, 445
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 2 cut(s) 280, 381
BstKTI GATC 5 cut(s) 17, 108, 426, 538, 654
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 5 cut(s) 14, 105, 423, 535, 651
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstPI GGTNACC 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 3 cut(s) 121, 581, 587
BstX2I RGATCY 4 cut(s) 14, 423, 535, 651
BstYI RGATCY 4 cut(s) 14, 423, 535, 651
BsuRI GGCC 4 cut(s) 325, 372, 460, 628
BtsCI GGATG 2 cut(s) 280, 381
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 312, 663
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 3 cut(s) 24, 456, 624
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 339, 499, 687
CviAII CATG 2 cut(s) 344, 526
CviQI GTAC 3 cut(s) 339, 499, 687
DdeI CTNAG 3 cut(s) 61, 298, 445
DpnI GATC 5 cut(s) 16, 107, 425, 537, 653
DpnII GATC 5 cut(s) 14, 105, 423, 535, 651
DriI GACNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 458, 626
Eam1104I CTCTTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 2 cut(s) 347, 529
FaqI GGGAC 1 cut(s) 177
FatI CATG 2 cut(s) 343, 525
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 3 cut(s) 135, 570, 601
FokI GGATG 2 cut(s) 287, 368
Fsp4HI GCNGC 3 cut(s) 135, 570, 601
FspBI CTAG 1 cut(s) 315
GluI GCNGC 3 cut(s) 135, 570, 601
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 4 cut(s) 325, 372, 460, 628
HapII CCGG 3 cut(s) 25, 457, 625
Hin1II CATG 2 cut(s) 347, 529
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 2 cut(s) 637, 674
HpaII CCGG 3 cut(s) 25, 457, 625
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 3 cut(s) 247, 301, 576
Hpy188III TCNNGA 4 cut(s) 109, 224, 544, 655
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 5 cut(s) 199, 214, 338, 498, 512
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 506, 569, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 3 cut(s) 61, 298, 445
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 347, 529
Kzo9I GATC 5 cut(s) 14, 105, 423, 535, 651
LmnI GCTCC 2 cut(s) 57, 469
Lsp1109I GCAGC 3 cut(s) 121, 581, 587
LweI GCATC 1 cut(s) 725
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 6 cut(s) 114, 177, 199, 208, 332, 389
MalI GATC 5 cut(s) 16, 107, 425, 537, 653
MboI GATC 5 cut(s) 14, 105, 423, 535, 651
MboII GAAGA 1 cut(s) 89
MflI RGATCY 4 cut(s) 14, 423, 535, 651
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 4 cut(s) 19, 579, 706, 728
MmeI TCCRAC 1 cut(s) 285
MseI TTAA 2 cut(s) 285, 564
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 3 cut(s) 25, 457, 625
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeI CATATG 1 cut(s) 358
NdeII GATC 5 cut(s) 14, 105, 423, 535, 651
NlaIII CATG 2 cut(s) 347, 529
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 3 cut(s) 199, 332, 389
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 2 cut(s) 637, 674
PkrI GCNGC 3 cut(s) 136, 571, 602
PshBI ATTAAT 1 cut(s) 564
PspEI GGTNACC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 4 cut(s) 14, 423, 535, 651
RsaI GTAC 3 cut(s) 340, 500, 688
RsaNI GTAC 3 cut(s) 339, 499, 687
SaqAI TTAA 2 cut(s) 285, 564
SatI GCNGC 3 cut(s) 135, 570, 601
Sau3AI GATC 5 cut(s) 14, 105, 423, 535, 651
Sau96I GGNCC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 725
SfcI CTRYAG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 4 cut(s) 19, 579, 706, 728
SsiI CCGC 1 cut(s) 467
SspI AATATT 1 cut(s) 557
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 5 cut(s) 199, 214, 338, 498, 512
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 350
TasI AATT 4 cut(s) 19, 579, 706, 728
TfiI GAWTC 2 cut(s) 637, 674
Tru1I TTAA 2 cut(s) 285, 564
Tru9I TTAA 2 cut(s) 285, 564
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 3 cut(s) 199, 332, 389
TseI GCWGC 3 cut(s) 134, 569, 600
Tsp45I GTSAC 3 cut(s) 199, 332, 389
TspDTI ATGAA 2 cut(s) 54, 650
TspRI CASTG 1 cut(s) 436
VspI ATTAAT 1 cut(s) 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.