RchiOBHm_Chr7g0207701
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24940807 .. 24943024
2218 bp
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UTR
Exon/CDS
Intron
PRQ18587

Sequence Viewer

Length: 381 bp
ATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGCTCTGAACCCTCTTCCTTGGATCACAAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTACCCCCTGTTTACTTCAGCACACTAGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTACGGAGTTTTGGTGTGGTGCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.11

Weight (kDa)

5.9

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 126 1.3e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 24 - 126 2.9e-18 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 133
AclWI GGATC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 2 cut(s) 135, 265
AgsI TTSAA 3 cut(s) 34, 178, 323
AhdI GACNNNNNGTC 1 cut(s) 125
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 129
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 2 cut(s) 15, 220
AluI AGCT 2 cut(s) 15, 220
Alw21I GWGCWC 1 cut(s) 195
AlwI GGATC 1 cut(s) 68
AoxI GGCC 2 cut(s) 248, 328
ApeKI GCWGC 2 cut(s) 89, 305
Asp718I GGTACC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 269
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 76, 292
BccI CCATC 2 cut(s) 339, 347
BciT130I CCWGG 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 2 cut(s) 158, 240
BisI GCNGC 2 cut(s) 90, 306
BlsI GCNGC 2 cut(s) 91, 307
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bse1I ACTGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 205, 339
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 76, 292
BshFI GGCC 2 cut(s) 250, 330
BshNI GGYRCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 195
BslFI GGGAC 2 cut(s) 132, 304
BsmFI GGGAC 2 cut(s) 132, 304
BsnI GGCC 2 cut(s) 250, 330
Bsp1286I GDGCHC 2 cut(s) 43, 195
Bsp143I GATC 2 cut(s) 22, 60
BspANI GGCC 2 cut(s) 250, 330
BspCNI CTCAG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 22, 60
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 16, 223
BstEII GGTNACC 1 cut(s) 257
BstF5I GGATG 2 cut(s) 205, 339
BstKTI GATC 2 cut(s) 25, 63
BstMBI GATC 2 cut(s) 22, 60
BstNI CCWGG 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 76, 292
BsuRI GGCC 2 cut(s) 250, 330
BtsCI GGATG 2 cut(s) 205, 339
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 134, 264
CviAII CATG 1 cut(s) 269
CviJI RGCY 8 cut(s) 15, 41, 104, 214, 220, 235, 250, 330
CviKI_1 RGCY 8 cut(s) 15, 41, 104, 214, 220, 235, 250, 330
CviQI GTAC 2 cut(s) 134, 264
DdeI CTNAG 2 cut(s) 16, 223
DpnI GATC 2 cut(s) 24, 62
DpnII GATC 2 cut(s) 22, 60
DriI GACNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 133
Eco91I GGTNACC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 272
FaiI YATR 6 cut(s) 166, 270, 297, 303, 318, 345
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 2 cut(s) 132, 304
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 90, 306
FokI GGATG 2 cut(s) 212, 326
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 90, 306
FspBI CTAG 2 cut(s) 158, 240
GluI GCNGC 2 cut(s) 90, 306
HaeIII GGCC 2 cut(s) 250, 330
Hin1II CATG 1 cut(s) 272
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 45, 226
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 189
HpyF3I CTNAG 2 cut(s) 16, 223
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 272
KpnI GGTACC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 22, 60
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 7 cut(s) 22, 107, 116, 143, 153, 312, 324
Lsp1109I GCAGC 2 cut(s) 76, 292
MaeI CTAG 2 cut(s) 158, 240
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 3 cut(s) 69, 257, 347
MalI GATC 2 cut(s) 24, 62
MboI GATC 2 cut(s) 22, 60
MboII GAAGA 2 cut(s) 32, 44
MhlI GDGCHC 2 cut(s) 43, 195
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 60, 109, 193, 196
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NdeII GATC 2 cut(s) 22, 60
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 257, 347
OliI CACNNNNGTG 1 cut(s) 158
PkrI GCNGC 2 cut(s) 91, 307
Psp6I CCWGG 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 248
RsaI GTAC 2 cut(s) 135, 265
RsaNI GTAC 2 cut(s) 134, 264
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 90, 306
Sau3AI GATC 2 cut(s) 22, 60
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 43, 195
SetI ASST 5 cut(s) 17, 71, 135, 192, 222
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 157
SspMI CTAG 2 cut(s) 158, 240
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 169, 275
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 2 cut(s) 257, 347
TseI GCWGC 2 cut(s) 89, 305
Tsp45I GTSAC 2 cut(s) 257, 347
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 2 cut(s) 158, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.