Rh7BG227700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000416
Physical Location & Seq
Forward (+)
19734334 .. 19753586
19253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG227700.1

Sequence Viewer

Length: 1143 bp
ATGGATTATAGAAATGTTGTGCAAGCTCTAAGAAGAGGCGACCTCCGACTTCTTCGGCATGCTTTTCAAGAGCATGAAGACAGGTTCTTTAGGTTTGCTGTATATCTTGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTGTTGAAAAAAGATTTATATTATCCAAAAGCAGAAGGACCCAAGCAAAGCTCACCAGCTGAAGTTGGAAGTAATTGTCAAAGCATTGAAATGGTCATTGATGTGGATGAGGTGGAGGGCATAATGGCGATGCTAATATACAAAACTCTGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTAGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATGTGAATATATGCCTAATAGGAACTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGCTAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGTGATATATCGAGATTTCAAATACTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCACTCAGACTTTGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCATGTCTTAGAAAGACACCGGCCAACAGCAGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCGCTCCTGAGAGACCAGTACGGCTTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTCGGAAGCTTAATCGCCGCCAGAATCCCAATTCCTGACTTCATTGGGTTTTGGGTGCAGGTTGATGGCATCAGGTGGGCAGTGTGGAAATCCCTTCATTTGTTAAAGCTTGAGAAACATTGTCTTAAGGCCTTACTGGAAAACTCCTTCGGCCATCTTCGGCTGTTTTCAGGTCATCTTACTTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

380

Amino Acids

43.83

Weight (kDa)

8.68

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 100 - 276 1.8e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 100 - 269 1.1e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 898
AciI CCGC 2 cut(s) 896, 969
AclWI GGATC 5 cut(s) 391, 404, 491, 775, 887
AcoI YGGCCR 2 cut(s) 815, 1102
AcuI CTGAAG 2 cut(s) 113, 225
AfaI GTAC 3 cut(s) 664, 857, 914
AflII CTTAAG 1 cut(s) 1076
AgsI TTSAA 7 cut(s) 68, 151, 233, 323, 457, 469, 577
AhdI GACNNNNNGTC 1 cut(s) 552
Alw21I GWGCWC 2 cut(s) 594, 954
Alw26I GTCTC 1 cut(s) 900
AlwI GGATC 5 cut(s) 391, 404, 491, 775, 887
AoxI GGCC 5 cut(s) 647, 727, 815, 1080, 1102
ApeKI GCWGC 2 cut(s) 512, 704
AspS9I GGNCC 2 cut(s) 182, 647
AsuHPI GGTGA 3 cut(s) 189, 335, 668
AvaII GGWCC 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 654, 687
BamHI GGATCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 954
BauI CACGAG 2 cut(s) 487, 540
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 594, 954
BbvI GCAGC 2 cut(s) 499, 691
BccI CCATC 5 cut(s) 377, 738, 746, 1010, 1113
BceAI ACGGC 2 cut(s) 419, 931
BcgI CGANNNNNNTGC 2 cut(s) 934, 968
BcoDI GTCTC 1 cut(s) 900
BfaI CTAG 6 cut(s) 113, 122, 353, 365, 522, 639
BfmI CTRYAG 2 cut(s) 378, 861
BfrI CTTAAG 1 cut(s) 1076
BfuAI ACCTGC 1 cut(s) 1000
BisI GCNGC 3 cut(s) 513, 705, 969
BlsI GCNGC 3 cut(s) 514, 706, 970
Bme18I GGWCC 1 cut(s) 182
BmeRI GACNNNNNGTC 1 cut(s) 552
BmgT120I GGNCC 2 cut(s) 182, 647
BmiI GGNNCC 2 cut(s) 184, 398
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 264, 1029
BmuI ACTGGG 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpuEI CTTGAG 2 cut(s) 501, 1082
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 748, 778
Bse118I RCCGGY 1 cut(s) 813
Bse1I ACTGG 5 cut(s) 553, 557, 793, 910, 1092
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 3 cut(s) 256, 604, 738
BseMII CTCAG 2 cut(s) 636, 893
BseNI ACTGG 5 cut(s) 553, 557, 793, 910, 1092
BseXI GCAGC 2 cut(s) 499, 691
BsgI GTGCAG 1 cut(s) 1028
BshFI GGCC 5 cut(s) 649, 729, 817, 1082, 1104
BsiHKAI GWGCWC 2 cut(s) 594, 954
BsiSI CCGG 1 cut(s) 814
BslFI GGGAC 2 cut(s) 559, 703
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 2 cut(s) 559, 703
BsnI GGCC 5 cut(s) 649, 729, 817, 1082, 1104
Bso31I GGTCTC 1 cut(s) 900
Bsp1286I GDGCHC 2 cut(s) 594, 954
Bsp143I GATC 5 cut(s) 396, 445, 483, 780, 892
BspACI CCGC 2 cut(s) 896, 969
BspANI GGCC 5 cut(s) 649, 729, 817, 1082, 1104
BspCNI CTCAG 2 cut(s) 635, 894
BspLI GGNNCC 2 cut(s) 184, 398
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 5 cut(s) 391, 404, 491, 775, 887
BspTI CTTAAG 1 cut(s) 1076
BspTNI GGTCTC 1 cut(s) 900
BsrBI CCGCTC 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 813
BsrI ACTGG 5 cut(s) 553, 557, 793, 910, 1092
BssAI RCCGGY 1 cut(s) 813
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 5 cut(s) 396, 445, 483, 780, 892
BssSI CACGAG 2 cut(s) 487, 540
BssT1I CCWWGG 1 cut(s) 479
Bst2BI CACGAG 2 cut(s) 487, 540
Bst4CI ACNGT 3 cut(s) 662, 855, 869
Bst6I CTCTTC 3 cut(s) 28, 480, 925
BstAFI CTTAAG 1 cut(s) 1076
BstC8I GCNNGC 5 cut(s) 24, 60, 312, 636, 943
BstDEI CTNAG 5 cut(s) 29, 439, 622, 802, 902
BstEII GGTNACC 1 cut(s) 656
BstF5I GGATG 3 cut(s) 256, 604, 738
BstKTI GATC 5 cut(s) 399, 448, 486, 783, 895
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 5 cut(s) 396, 445, 483, 780, 892
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNSI RCATGY 2 cut(s) 62, 800
BstPI GGTNACC 1 cut(s) 656
BstSFI CTRYAG 2 cut(s) 378, 861
BstV1I GCAGC 2 cut(s) 499, 691
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 3 cut(s) 396, 780, 892
BstYI RGATCY 3 cut(s) 396, 780, 892
BsuRI GGCC 5 cut(s) 649, 729, 817, 1082, 1104
BtgZI GCGATG 1 cut(s) 287
BtsCI GGATG 3 cut(s) 256, 604, 738
BtsI GCAGTG 2 cut(s) 687, 1038
BtsIMutI CAGTG 4 cut(s) 564, 687, 786, 1038
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 5 cut(s) 24, 60, 312, 636, 943
Cfr10I RCCGGY 1 cut(s) 813
Cfr13I GGNCC 2 cut(s) 182, 647
Csp6I GTAC 3 cut(s) 663, 856, 913
CviAII CATG 6 cut(s) 59, 74, 668, 797, 883, 922
CviQI GTAC 3 cut(s) 663, 856, 913
DdeI CTNAG 5 cut(s) 29, 439, 622, 802, 902
DpnI GATC 5 cut(s) 398, 447, 485, 782, 894
DpnII GATC 5 cut(s) 396, 445, 483, 780, 892
DriI GACNNNNNGTC 1 cut(s) 552
EaeI YGGCCR 2 cut(s) 815, 1102
Eam1104I CTCTTC 3 cut(s) 28, 480, 925
Eam1105I GACNNNNNGTC 1 cut(s) 552
EarI CTCTTC 3 cut(s) 28, 480, 925
Ecl136II GAGCTC 1 cut(s) 952
Eco130I CCWWGG 1 cut(s) 479
Eco147I AGGCCT 1 cut(s) 1082
Eco24I GRGCYC 1 cut(s) 954
Eco31I GGTCTC 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 952
Eco57I CTGAAG 2 cut(s) 113, 225
Eco91I GGTNACC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 952
EcoO109I RGGNCCY 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 954
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 6 cut(s) 62, 77, 671, 800, 886, 925
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 435, 467
FaqI GGGAC 2 cut(s) 559, 703
FatI CATG 6 cut(s) 58, 73, 667, 796, 882, 921
Fnu4HI GCNGC 3 cut(s) 513, 705, 969
FokI GGATG 3 cut(s) 263, 611, 725
FriOI GRGCYC 1 cut(s) 954
Fsp4HI GCNGC 3 cut(s) 513, 705, 969
FspBI CTAG 6 cut(s) 113, 122, 353, 365, 522, 639
GluI GCNGC 3 cut(s) 513, 705, 969
HaeIII GGCC 5 cut(s) 649, 729, 817, 1082, 1104
HapII CCGG 1 cut(s) 814
Hin1II CATG 6 cut(s) 62, 77, 671, 800, 886, 925
HindIII AAGCTT 4 cut(s) 359, 833, 958, 1058
HinfI GANTC 2 cut(s) 935, 975
HpaII CCGG 1 cut(s) 814
HphI GGTGA 3 cut(s) 189, 335, 668
Hpy188I TCNGA 4 cut(s) 47, 141, 625, 956
Hpy188III TCNNGA 5 cut(s) 68, 487, 569, 901, 986
HpyAV CCTTC 4 cut(s) 173, 638, 1055, 1108
HpyCH4III ACNGT 3 cut(s) 662, 855, 869
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 22, 314, 863, 1009
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 5 cut(s) 29, 439, 622, 802, 902
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 6 cut(s) 62, 77, 671, 800, 886, 925
Kzo9I GATC 5 cut(s) 396, 445, 483, 780, 892
LmnI GCTCC 1 cut(s) 903
Lsp1109I GCAGC 2 cut(s) 499, 691
LweI GCATC 2 cut(s) 264, 1029
MaeI CTAG 6 cut(s) 113, 122, 353, 365, 522, 639
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 3 cut(s) 492, 656, 746
MalI GATC 5 cut(s) 398, 447, 485, 782, 894
MbiI CCGCTC 1 cut(s) 898
MboI GATC 5 cut(s) 396, 445, 483, 780, 892
MboII GAAGA 7 cut(s) 44, 45, 89, 455, 467, 942, 1100
MflI RGATCY 3 cut(s) 396, 780, 892
MhlI GDGCHC 2 cut(s) 594, 954
MluCI AATT 3 cut(s) 217, 323, 981
MmeI TCCRAC 4 cut(s) 70, 190, 424, 609
MseI TTAA 4 cut(s) 609, 962, 1055, 1077
MslI CAYNNNNRTG 2 cut(s) 233, 245
MspA1I CMGCKG 1 cut(s) 203
MspCI CTTAAG 1 cut(s) 1076
MspI CCGG 1 cut(s) 814
MwoI GCNNNNNNNGC 1 cut(s) 518
NdeII GATC 5 cut(s) 396, 445, 483, 780, 892
NlaIII CATG 6 cut(s) 62, 77, 671, 800, 886, 925
NlaIV GGNNCC 2 cut(s) 184, 398
NmuCI GTSAC 2 cut(s) 656, 746
NspI RCATGY 2 cut(s) 62, 800
PaeI GCATGC 1 cut(s) 62
PceI AGGCCT 1 cut(s) 1082
PfeI GAWTC 2 cut(s) 935, 975
PkrI GCNGC 3 cut(s) 514, 706, 970
PpuMI RGGWCCY 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 184, 398
PspPI GGNCC 2 cut(s) 182, 647
PspPPI RGGWCCY 1 cut(s) 182
PstI CTGCAG 1 cut(s) 865
PsuI RGATCY 3 cut(s) 396, 780, 892
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 664, 857, 914
RsaNI GTAC 3 cut(s) 663, 856, 913
RseI CAYNNNNRTG 2 cut(s) 233, 245
SacI GAGCTC 1 cut(s) 954
SaqAI TTAA 4 cut(s) 609, 962, 1055, 1077
SatI GCNGC 3 cut(s) 513, 705, 969
Sau3AI GATC 5 cut(s) 396, 445, 483, 780, 892
Sau96I GGNCC 2 cut(s) 182, 647
SduI GDGCHC 2 cut(s) 594, 954
SfaNI GCATC 2 cut(s) 264, 1029
SfcI CTRYAG 2 cut(s) 378, 861
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 233, 245
SmlI CTYRAG 3 cut(s) 516, 1061, 1076
SmoI CTYRAG 3 cut(s) 516, 1061, 1076
SphI GCATGC 1 cut(s) 62
Sse9I AATT 3 cut(s) 217, 323, 981
SseBI AGGCCT 1 cut(s) 1082
SsiI CCGC 2 cut(s) 896, 969
SspMI CTAG 6 cut(s) 113, 122, 353, 365, 522, 639
SstI GAGCTC 1 cut(s) 954
StuI AGGCCT 1 cut(s) 1082
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 3 cut(s) 662, 855, 869
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 568, 674, 720
TasI AATT 3 cut(s) 217, 323, 981
TauI GCSGC 1 cut(s) 971
TfiI GAWTC 2 cut(s) 935, 975
Tru1I TTAA 4 cut(s) 609, 962, 1055, 1077
Tru9I TTAA 4 cut(s) 609, 962, 1055, 1077
TscAI CASTG 4 cut(s) 564, 687, 793, 1038
TseFI GTSAC 2 cut(s) 656, 746
TseI GCWGC 2 cut(s) 512, 704
Tsp45I GTSAC 2 cut(s) 656, 746
TspDTI ATGAA 4 cut(s) 90, 910, 982, 1037
TspRI CASTG 4 cut(s) 564, 687, 793, 1038
Vha464I CTTAAG 1 cut(s) 1076
VpaK11BI GGWCC 1 cut(s) 182
XceI RCATGY 2 cut(s) 62, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XspI CTAG 6 cut(s) 113, 122, 353, 365, 522, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.