RchiOBHm_Chr1g0344381
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000416
Physical Location & Seq
Reverse (-)
36688102 .. 36690480
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57084

Sequence Viewer

Length: 858 bp
ATGAAGTGTTTCTACTACTTTAAGGAAAAGTCTAAGAGCAGGGAACAAAGATCAGCTCCTGAGCTAAAAGACCAAAGCAGCTCTGATTATTCAGGAGCTGATAGGGTCATTAAGTCTTCCTGCTCAGCAAATTCACCGCGCGGTATACCAGAATTGTATGAAGAAAAGGCTCATAATCTAAGGGTGTTTACTTTCCAAGAGCTGAGGCAGGCAACAAATGATTTCAATAGGTTGCTTAAGATTGGAGAAGGTGGATTTGGAAATGTCTATAAGGGTTCAATTAAGCCTGCTGAGTCCAAGGGCGATCCAGTTGTGGTCGCCATTAAAAAGCTCAACAACGACGGCTTACAGGGTCACAAACAATGGGTGGCAGAAGTTCAGTTTCTAAGTGTTGTGGAGCACCCGAATCTTGTCAAACTAATAGGATACTGTGCTGTGGATGGAGAAAGAGGAATTCAAAGACTACTCGTCTATGAATATATGCCAAACAGAAGTTTAGAAGATCATCTATTTAACAGGACATACCCATCTATTCCTTGGGAGACAAGATTACAGATAATACTGGGAGCTGCTCAAGGATTAGCTTATCTTCATGAAGGATTGGAAGTTCAGGTAATATATCGAGATTTCAAATGTTCAAATGTGTTATTGGATGAGAATTTTAAACCGAAGCTTTCAGACTTTGGGCTAGCGAGGGAGGGGCCAACGCTTGGGCATACTCATGTGTCAACTGCAGTAGTGGGAACATTTGGATATGCTGCTCCAGATTACATTGAGACGGGCCATCTGACAACTAAGAGTGATGTCTGGAGCTTCGGTGTAGTGTTGTATGAATTCTTACAGGCAGGCGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

32.07

Weight (kDa)

6.51

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 76 - 280 4.3e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 80 - 284 1.8e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 139, 141
AciI CCGC 2 cut(s) 137, 141
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 4 cut(s) 130, 453, 658, 833
AfiI CCNNNNNNNGG 1 cut(s) 710
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 5 cut(s) 226, 279, 458, 631, 639
AhdI GACNNNNNGTC 1 cut(s) 467
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AloI GAACNNNNNNTCC 2 cut(s) 591, 623
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 536, 770
AlwI GGATC 1 cut(s) 299
AlwNI CAGNNNCTG 2 cut(s) 59, 98
AoxI GGCC 2 cut(s) 701, 781
ApeKI GCWGC 3 cut(s) 78, 569, 758
ApoI RAATTY 4 cut(s) 130, 453, 658, 833
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 701, 781
AsuHPI GGTGA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 688
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 90, 556, 745
BccI CCATC 3 cut(s) 434, 535, 792
BceAI ACGGC 1 cut(s) 358
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 536, 770
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 3 cut(s) 79, 570, 759
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 3 cut(s) 80, 571, 760
BmeRI GACNNNNNGTC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 701, 781
BmiI GGNNCC 1 cut(s) 702
BmrI ACTGGG 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 692
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 2 cut(s) 747, 829
Bpu10I CCTNAGC 2 cut(s) 60, 203
Bpu1102I GCTNAGC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 297, 536
BsaXI ACNNNNNCTCC 2 cut(s) 802, 832
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse1I ACTGG 2 cut(s) 308, 567
BseDI CCNNGG 2 cut(s) 297, 536
BseGI GGATG 2 cut(s) 445, 658
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMII CTCAG 4 cut(s) 51, 138, 194, 282
BseNI ACTGG 2 cut(s) 308, 567
BseXI GCAGC 3 cut(s) 90, 556, 745
Bsh1236I CGCG 2 cut(s) 139, 141
BshFI GGCC 2 cut(s) 703, 783
BsiHKAI GWGCWC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 2 cut(s) 536, 770
BsmBI CGTCTC 1 cut(s) 770
BsnI GGCC 2 cut(s) 703, 783
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 50, 304, 502, 850
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 137, 141
BspANI GGCC 2 cut(s) 703, 783
BspCNI CTCAG 4 cut(s) 52, 137, 195, 283
BspFNI CGCG 2 cut(s) 139, 141
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 2 cut(s) 308, 567
BssECI CCNNGG 2 cut(s) 297, 536
BssMI GATC 4 cut(s) 50, 304, 502, 850
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 2 cut(s) 297, 536
Bst1107I GTATAC 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 431
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 4 cut(s) 210, 288, 690, 847
BstDEI CTNAG 8 cut(s) 33, 60, 124, 179, 203, 291, 386, 795
BstF5I GGATG 2 cut(s) 445, 658
BstFNI CGCG 2 cut(s) 139, 141
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 53, 307, 505, 853
BstMAI GTCTC 2 cut(s) 536, 770
BstMBI GATC 4 cut(s) 50, 304, 502, 850
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 2 cut(s) 139, 141
BstV1I GCAGC 3 cut(s) 90, 556, 745
BstV2I GAAGAC 1 cut(s) 108
BstZ17I GTATAC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 2 cut(s) 703, 783
BtsCI GGATG 2 cut(s) 445, 658
Cac8I GCNNGC 4 cut(s) 210, 288, 690, 847
CaiI CAGNNNCTG 2 cut(s) 59, 98
CciI TCATGA 1 cut(s) 592
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 701, 781
CviAII CATG 2 cut(s) 593, 722
DdeI CTNAG 8 cut(s) 33, 60, 124, 179, 203, 291, 386, 795
DpnI GATC 4 cut(s) 52, 306, 504, 852
DpnII GATC 4 cut(s) 50, 304, 502, 850
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 467
Eam1105I GACNNNNNGTC 1 cut(s) 467
Eco130I CCWWGG 2 cut(s) 297, 536
EcoRI GAATTC 2 cut(s) 453, 833
EcoT14I CCWWGG 2 cut(s) 297, 536
ErhI CCWWGG 2 cut(s) 297, 536
Esp3I CGTCTC 1 cut(s) 770
FaeI CATG 2 cut(s) 596, 725
FatI CATG 2 cut(s) 592, 721
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 79, 570, 759
FokI GGATG 2 cut(s) 452, 665
Fsp4HI GCNGC 3 cut(s) 79, 570, 759
FspBI CTAG 1 cut(s) 689
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 79, 570, 759
GsuI CTGGAG 2 cut(s) 747, 829
HaeIII GGCC 2 cut(s) 703, 783
HhaI GCGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 596, 725
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 2 cut(s) 293, 406
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 146, 189, 729
Hpy188I TCNGA 3 cut(s) 85, 679, 789
Hpy188III TCNNGA 6 cut(s) 59, 93, 593, 623, 764, 808
Hpy8I GTNNAC 3 cut(s) 146, 189, 729
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 242, 590
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 734
HpyF3I CTNAG 8 cut(s) 33, 60, 124, 179, 203, 291, 386, 795
Hsp92II CATG 2 cut(s) 596, 725
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 4 cut(s) 50, 304, 502, 850
LmnI GCTCC 6 cut(s) 61, 95, 397, 566, 766, 810
Lsp1109I GCAGC 3 cut(s) 90, 556, 745
MaeI CTAG 1 cut(s) 689
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 52, 306, 504, 852
MboI GATC 4 cut(s) 50, 304, 502, 850
MboII GAAGA 4 cut(s) 108, 173, 512, 581
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 6 cut(s) 130, 152, 279, 453, 658, 833
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 4 cut(s) 198, 443, 687, 691
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 7 cut(s) 21, 111, 237, 282, 324, 513, 663
MslI CAYNNNNRTG 1 cut(s) 720
MspCI CTTAAG 1 cut(s) 236
MvnI CGCG 2 cut(s) 139, 141
NdeII GATC 4 cut(s) 50, 304, 502, 850
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 2 cut(s) 596, 725
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 3 cut(s) 80, 571, 760
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 2 cut(s) 701, 781
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 2 cut(s) 59, 98
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 7 cut(s) 21, 111, 237, 282, 324, 513, 663
SatI GCNGC 3 cut(s) 79, 570, 759
Sau3AI GATC 4 cut(s) 50, 304, 502, 850
Sau96I GGNCC 2 cut(s) 701, 781
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 732
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 2 cut(s) 236, 573
SmoI CTYRAG 2 cut(s) 236, 573
Sse9I AATT 6 cut(s) 130, 152, 279, 453, 658, 833
SsiI CCGC 2 cut(s) 137, 141
SspMI CTAG 1 cut(s) 689
StyI CCWWGG 2 cut(s) 297, 536
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 1 cut(s) 622
TasI AATT 6 cut(s) 130, 152, 279, 453, 658, 833
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 7 cut(s) 21, 111, 237, 282, 324, 513, 663
Tru9I TTAA 7 cut(s) 21, 111, 237, 282, 324, 513, 663
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 3 cut(s) 78, 569, 758
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 6 cut(s) 17, 174, 489, 581, 609, 846
Van91I CCANNNNNTGG 1 cut(s) 710
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 4 cut(s) 130, 453, 658, 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.