RCHIOBHM_CHR0C22G0500491
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000416
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGGCTTGCAGAGGTTCAATTTCTTGGTGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATTTACACGAGGGACTGGAAGTCCAGGTGATATATCAAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGCCATCTTCCATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

87

Amino Acids

9.73

Weight (kDa)

6.25

Isoelectric Point (pI)

13.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 59
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 3 cut(s) 18, 37, 142
AhdI GACNNNNNGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 80, 245
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 136, 233
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BauI CACGAG 2 cut(s) 55, 104
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 67, 257
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 81, 246
BlsI GCNGC 2 cut(s) 82, 247
Bme1390I CCNGG 1 cut(s) 122
BmeRI GACNNNNNGTC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 169, 256
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 67, 257
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 51
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 200
BspPI GGATC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 51
BssSI CACGAG 2 cut(s) 55, 104
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 2 cut(s) 55, 104
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 7, 201
BstDEI CTNAG 1 cut(s) 187
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 2 cut(s) 169, 256
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 67, 257
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 169, 256
Cac8I GCNNGC 2 cut(s) 7, 201
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 233
CviJI RGCY 8 cut(s) 5, 32, 95, 178, 184, 199, 214, 248
CviKI_1 RGCY 8 cut(s) 5, 32, 95, 178, 184, 199, 214, 248
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DriI GACNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 47
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 130, 234, 262
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 81, 246
FokI GGATG 2 cut(s) 176, 243
Fsp4HI GCNGC 2 cut(s) 81, 246
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 81, 246
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 1 cut(s) 236
HphI GGTGA 2 cut(s) 136, 233
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 55, 134
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 9
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 98, 107, 134
Lsp1109I GCAGC 2 cut(s) 67, 257
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 60, 221
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 35, 244
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 6 cut(s) 5, 51, 51, 100, 157, 160
MseI TTAA 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 82, 247
Psp6I CCWGG 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 81, 246
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 159
SetI ASST 5 cut(s) 16, 62, 126, 156, 186
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 18
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 80, 245
Tsp45I GTSAC 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.