Rmu_sc0012558.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012558.1
OG0000416
Physical Location & Seq
Reverse (-)
376 .. 2527
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012558.1_g000001.1.cds

Sequence Viewer

Length: 1284 bp
atgaagtgtttctactactttaaggaaaagtctaagagcagggaacaaagatcagctcctgagctaaaagaccaaagcagctctgattattcaggagctgatagggtcattaagtcttcctgctcagcaaattcaccgcgcggtataccagaattgtatgaagaaaaggctcataatttaagggtgtttactttccaagagctgaggcaagcaacaaatgatttcagtaggttgcttaagattggagaaggtggatttggaaatgtctataagggttcaattaagcctgctgagtccaagggcgatccagttgtggtcgccattaaaaagctcaacaacgacggcttacagggtcacaaacaatgggtggcagaagttcagtttctaagtgttgtggagcacccgaatcttgtcaaactaataggatactgtgctgtggatggagaaagaggaattcaaagactactcgtctatgaatatatgccaaacagaagtttagaagatcatctatttaacaggacatacccaactattccttgggagacaagattacagataatactgggagctgctcaaggattagcttatcttcatgaaggattggaagttcaggtaatatatcgagatttcaaatgttcaaatgtgttattggatgagaattttaaaccgaagctttcagactttgggctagcgagggaggggccaatgcttgggcatactcatgtgtcaactgcagtagtgggaacatttggatatgctgctccagattacattgagacgggccatctgacaactaagagtgatgtctggagcttcggtgtagtgttgtatgaaattctcacaggcaggcgatcattagagagaaaccggccaagaacagaacagatactcttaaattgggtgaaacagtttcctcctgagagcaaaaggtttggcttgatgatagatcctcgacttggaagcagttattttagcagtgcagcaagaaaaattgccaagttggctgacagttgtctgtcaaagagtgcaaaagaccggccaacaatgagtcaggtagtagaaacattgaagcagattatccaagactcagaagaaggaaaccgatccgagagaagtcctgaatctttagaaagtgaccaagttgactctgggacaaaggagaagcaattaggggcctcagagtcgtggaaaagacgaatgactcacctggcgaaactaggagagcatgtggagggtgctagtagaagaagattcatgattatgcagagggcaaaggtgacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

427

Amino Acids

48.31

Weight (kDa)

9.1

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 139, 141
AciI CCGC 2 cut(s) 137, 141
AclWI GGATC 3 cut(s) 299, 941, 1098
AcoI YGGCCR 2 cut(s) 869, 1037
AcsI RAATTY 4 cut(s) 130, 453, 658, 834
AfiI CCNNNNNNNGG 2 cut(s) 710, 956
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 5 cut(s) 279, 458, 631, 639, 1069
AhdI GACNNNNNGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AloI GAACNNNNNNTCC 2 cut(s) 591, 623
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 536, 770
AlwI GGATC 3 cut(s) 299, 941, 1098
AlwNI CAGNNNCTG 2 cut(s) 59, 98
AoxI GGCC 5 cut(s) 701, 781, 869, 1037, 1173
ApeKI GCWGC 4 cut(s) 78, 569, 758, 980
ApoI RAATTY 4 cut(s) 130, 453, 658, 834
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 3 cut(s) 701, 781, 1173
AsuHPI GGTGA 3 cut(s) 126, 913, 1196
AsuNHI GCTAGC 1 cut(s) 688
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 4 cut(s) 90, 556, 745, 992
BccI CCATC 2 cut(s) 434, 792
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 1208
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 536, 770
BfaI CTAG 3 cut(s) 689, 1217, 1239
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 1001
BisI GCNGC 4 cut(s) 79, 570, 759, 981
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 4 cut(s) 80, 571, 760, 982
Bme1390I CCNGG 1 cut(s) 1208
BmeRI GACNNNNNGTC 1 cut(s) 467
BmgT120I GGNCC 3 cut(s) 701, 781, 1173
BmiI GGNNCC 2 cut(s) 702, 1174
BmrFI CCNGG 1 cut(s) 1208
BmrI ACTGGG 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 692
BmuI ACTGGG 1 cut(s) 572
BoxI GACNNNNGTC 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 2 cut(s) 747, 829
Bpu10I CCTNAGC 2 cut(s) 60, 203
Bpu1102I GCTNAGC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 297, 536
BsaXI ACNNNNNCTCC 4 cut(s) 802, 832, 1212, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 710, 956
Bse118I RCCGGY 2 cut(s) 867, 1035
Bse1I ACTGG 2 cut(s) 308, 567
BseBI CCWGG 1 cut(s) 1208
BseDI CCNNGG 2 cut(s) 297, 536
BseGI GGATG 2 cut(s) 445, 658
BseLI CCNNNNNNNGG 2 cut(s) 710, 956
BseMII CTCAG 7 cut(s) 51, 138, 194, 282, 909, 1101, 1191
BseNI ACTGG 2 cut(s) 308, 567
BseXI GCAGC 4 cut(s) 90, 556, 745, 992
BsgI GTGCAG 1 cut(s) 999
Bsh1236I CGCG 2 cut(s) 139, 141
BshFI GGCC 5 cut(s) 703, 783, 871, 1039, 1175
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 868, 1036
BslFI GGGAC 1 cut(s) 1165
BslI CCNNNNNNNGG 2 cut(s) 710, 956
BsmAI GTCTC 2 cut(s) 536, 770
BsmBI CGTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 1165
BsnI GGCC 5 cut(s) 703, 783, 871, 1039, 1175
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 137, 141
BspANI GGCC 5 cut(s) 703, 783, 871, 1039, 1175
BspCNI CTCAG 7 cut(s) 52, 137, 195, 283, 910, 1100, 1190
BspFNI CGCG 2 cut(s) 139, 141
BspHI TCATGA 2 cut(s) 592, 1254
BspLI GGNNCC 2 cut(s) 702, 1174
BspMAI CTGCAG 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 3 cut(s) 299, 941, 1098
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 867, 1035
BsrI ACTGG 2 cut(s) 308, 567
BssAI RCCGGY 2 cut(s) 867, 1035
BssECI CCNNGG 2 cut(s) 297, 536
BssMI GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 2 cut(s) 297, 536
Bst1107I GTATAC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 1208
Bst4CI ACNGT 3 cut(s) 431, 909, 1010
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 4 cut(s) 210, 288, 690, 848
BstF5I GGATG 2 cut(s) 445, 658
BstFNI CGCG 2 cut(s) 139, 141
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 6 cut(s) 53, 307, 505, 854, 949, 1106
BstMAI GTCTC 2 cut(s) 536, 770
BstMBI GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
BstMWI GCNNNNNNNGC 1 cut(s) 1001
BstNI CCWGG 1 cut(s) 1208
BstNSI RCATGY 1 cut(s) 1229
BstPAI GACNNNNGTC 1 cut(s) 1011
BstSCI CCNGG 1 cut(s) 1206
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 2 cut(s) 139, 141
BstV1I GCAGC 4 cut(s) 90, 556, 745, 992
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 946
BstYI RGATCY 1 cut(s) 946
BstZ17I GTATAC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 5 cut(s) 703, 783, 871, 1039, 1175
BtsCI GGATG 2 cut(s) 445, 658
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 1 cut(s) 982
Cac8I GCNNGC 4 cut(s) 210, 288, 690, 848
CaiI CAGNNNCTG 2 cut(s) 59, 98
CciI TCATGA 2 cut(s) 592, 1254
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 2 cut(s) 867, 1035
Cfr13I GGNCC 3 cut(s) 701, 781, 1173
CviAII CATG 4 cut(s) 593, 722, 1226, 1255
DpnI GATC 6 cut(s) 52, 306, 504, 853, 948, 1105
DpnII GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 2 cut(s) 869, 1037
Eam1105I GACNNNNNGTC 1 cut(s) 467
Eco130I CCWWGG 2 cut(s) 297, 536
EcoO109I RGGNCCY 1 cut(s) 1173
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 1206
EcoT14I CCWWGG 2 cut(s) 297, 536
ErhI CCWWGG 2 cut(s) 297, 536
Esp3I CGTCTC 1 cut(s) 770
FaeI CATG 4 cut(s) 596, 725, 1229, 1258
FaqI GGGAC 1 cut(s) 1165
FatI CATG 4 cut(s) 592, 721, 1225, 1254
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 79, 570, 759, 981
FokI GGATG 2 cut(s) 452, 665
Fsp4HI GCNGC 4 cut(s) 79, 570, 759, 981
FspBI CTAG 3 cut(s) 689, 1217, 1239
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 79, 570, 759, 981
GsuI CTGGAG 2 cut(s) 747, 829
HaeIII GGCC 5 cut(s) 703, 783, 871, 1039, 1175
HapII CCGG 2 cut(s) 868, 1036
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 596, 725, 1229, 1258
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 729, 1144
HindII GTYRAC 2 cut(s) 729, 1144
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 9 cut(s) 293, 406, 1048, 1085, 1121, 1145, 1181, 1201, 1251
HpaII CCGG 2 cut(s) 868, 1036
HphI GGTGA 3 cut(s) 126, 913, 1196
Hpy166II GTNNAC 4 cut(s) 146, 189, 729, 1144
Hpy188I TCNGA 6 cut(s) 85, 679, 789, 1090, 1108, 1180
Hpy188III TCNNGA 9 cut(s) 59, 93, 593, 623, 764, 808, 917, 1118, 1255
Hpy8I GTNNAC 4 cut(s) 146, 189, 729, 1144
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 242, 590, 1088
HpyCH4III ACNGT 3 cut(s) 431, 909, 1010
HpyCH4V TGCA 4 cut(s) 734, 980, 1028, 1264
HpyF10VI GCNNNNNNNGC 1 cut(s) 1001
Hsp92II CATG 4 cut(s) 596, 725, 1229, 1258
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
LmnI GCTCC 6 cut(s) 61, 95, 397, 566, 766, 810
Lsp1109I GCAGC 4 cut(s) 90, 556, 745, 992
MaeI CTAG 3 cut(s) 689, 1217, 1239
MaeIII GTNAC 3 cut(s) 353, 1133, 1276
MalI GATC 6 cut(s) 52, 306, 504, 853, 948, 1105
MboI GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
MboII GAAGA 7 cut(s) 108, 173, 512, 581, 1103, 1257, 1260
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 1 cut(s) 402
MlyI GAGTC 6 cut(s) 302, 1057, 1079, 1139, 1190, 1195
MnlI CCTC 9 cut(s) 198, 443, 687, 691, 924, 960, 1186, 1225, 1260
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 663, 893
MslI CAYNNNNRTG 2 cut(s) 720, 1259
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 2 cut(s) 868, 1036
MspR9I CCNGG 1 cut(s) 1208
MvaI CCWGG 1 cut(s) 1208
MvnI CGCG 2 cut(s) 139, 141
MwoI GCNNNNNNNGC 1 cut(s) 1001
NdeII GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 4 cut(s) 596, 725, 1229, 1258
NlaIV GGNNCC 2 cut(s) 702, 1174
NmuCI GTSAC 3 cut(s) 353, 1133, 1276
NspI RCATGY 1 cut(s) 1229
PagI TCATGA 2 cut(s) 592, 1254
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 406, 1121, 1251
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 4 cut(s) 80, 571, 760, 982
PleI GAGTC 6 cut(s) 301, 1056, 1079, 1139, 1189, 1195
PpsI GAGTC 6 cut(s) 301, 1056, 1079, 1139, 1189, 1195
PshAI GACNNNNGTC 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 1206
PspGI CCWGG 1 cut(s) 1206
PspN4I GGNNCC 2 cut(s) 702, 1174
PspPI GGNCC 3 cut(s) 701, 781, 1173
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 2 cut(s) 59, 98
PsuI RGATCY 1 cut(s) 946
RseI CAYNNNNRTG 2 cut(s) 720, 1259
SaqAI TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 663, 893
SatI GCNGC 4 cut(s) 79, 570, 759, 981
Sau3AI GATC 6 cut(s) 50, 304, 502, 851, 946, 1103
Sau96I GGNCC 3 cut(s) 701, 781, 1173
SchI GAGTC 6 cut(s) 302, 1057, 1079, 1139, 1190, 1195
ScrFI CCNGG 1 cut(s) 1208
SduI GDGCHC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 732
SmiMI CAYNNNNRTG 2 cut(s) 720, 1259
SmlI CTYRAG 2 cut(s) 236, 573
SmoI CTYRAG 2 cut(s) 236, 573
SsiI CCGC 2 cut(s) 137, 141
SspMI CTAG 3 cut(s) 689, 1217, 1239
StyD4I CCNGG 1 cut(s) 1206
StyI CCWWGG 2 cut(s) 297, 536
TaaI ACNGT 3 cut(s) 431, 909, 1010
TaqI TCGA 2 cut(s) 622, 952
TfiI GAWTC 3 cut(s) 406, 1121, 1251
Tru1I TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 663, 893
Tru9I TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 663, 893
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 3 cut(s) 353, 1133, 1276
TseI GCWGC 4 cut(s) 78, 569, 758, 980
Tsp45I GTSAC 3 cut(s) 353, 1133, 1276
TspDTI ATGAA 7 cut(s) 17, 174, 489, 581, 609, 846, 1243
TspRI CASTG 1 cut(s) 982
Van91I CCANNNNNTGG 1 cut(s) 710
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 4 cut(s) 130, 453, 658, 834
XceI RCATGY 1 cut(s) 1229
XcmI CCANNNNNNNNNTGG 2 cut(s) 534, 1145
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 689, 1217, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.