Rorug01G0173500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000416
Physical Location & Seq
Reverse (-)
23644004 .. 23645746
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0173500.1

Sequence Viewer

Length: 645 bp
ATGATTCAGTGCTCTCCGCTCGGTAAGAACAACTGGAAAAGGGATTTTGTTCGCAGGTCGATTCAAGCATTAGCCTTGGTTCTGCTAAAGCAAGAAAAGGTGGCATCTGTTATTAGTTTTAGGACTGTCGTGACGTCAATGGAGAACAATCATGATTTTGATATTTTGGTCCCAAATCTTGAGTGTTTCTGCAGTGAGGTTATATTAACTCTAGGCAGTTCAAAAACAGTACAGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAAGATCATTTCGGGTATTTGCTGCAGAGGGAGCTCCAAGGGGCATCTTCTTGCAAAAGAATTGGCTGGAAGAGGTTTACAAACAGCGCTGATTACTGATTCTGCAATTTTTGCTATGATATCTCAAGTGATCATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACCTTGCAGCCCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTTACAAGGTTACATAACACAAAACTACTTGTATTTTTATCATTTGAAAAATCCTTCGTTTTGTTTTCATTTTTGGGGTTTAAAACAACTTGGTCTAATAACAATCCACCTATGGGGTAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

214

Amino Acids

23.65

Weight (kDa)

9.12

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 66 - 171 6.2e-22 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 45
AccBSI CCGCTC 1 cut(s) 19
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 2 cut(s) 231, 508
AfeI AGCGCT 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 631
AgsI TTSAA 4 cut(s) 65, 222, 460, 565
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw21I GWGCWC 3 cut(s) 14, 299, 415
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 3 cut(s) 248, 285, 477
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 169
AvaII GGWCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 1 cut(s) 299
Bbv12I GWGCWC 3 cut(s) 14, 299, 415
BbvI GCAGC 3 cut(s) 235, 272, 489
BclI TGATCA 1 cut(s) 393
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 2 cut(s) 190, 286
BfoI RGCGCY 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 45
BisI GCNGC 3 cut(s) 249, 286, 478
BlsI GCNGC 3 cut(s) 250, 287, 479
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 2 cut(s) 113, 316
BpuEI CTTGAG 2 cut(s) 200, 372
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 75, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 75, 300
BseLI CCNNNNNNNGG 1 cut(s) 631
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 235, 272, 489
BshFI GGCC 1 cut(s) 428
BsiHKAI GWGCWC 3 cut(s) 14, 299, 415
BslFI GGGAC 2 cut(s) 155, 480
BslI CCNNNNNNNGG 1 cut(s) 631
BsmFI GGGAC 2 cut(s) 155, 480
BsnI GGCC 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 14, 299, 415
Bsp143I GATC 2 cut(s) 267, 393
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 428
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 171
BspMAI CTGCAG 2 cut(s) 194, 290
BspMI ACCTGC 1 cut(s) 45
BsrBI CCGCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 75, 300
BssMI GATC 2 cut(s) 267, 393
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 2 cut(s) 75, 300
Bst4CI ACNGT 2 cut(s) 127, 229
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 490, 515
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 2 cut(s) 270, 396
BstMBI GATC 2 cut(s) 267, 393
BstMWI GCNNNNNNNGC 3 cut(s) 294, 374, 425
BstNSI RCATGY 1 cut(s) 492
BstSFI CTRYAG 2 cut(s) 190, 286
BstV1I GCAGC 3 cut(s) 235, 272, 489
BsuRI GGCC 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 14, 199
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 490, 515
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 230, 507
CviAII CATG 5 cut(s) 152, 397, 416, 424, 489
CviJI RGCY 5 cut(s) 74, 297, 329, 428, 480
CviKI_1 RGCY 5 cut(s) 74, 297, 329, 428, 480
CviQI GTAC 2 cut(s) 230, 507
DpnI GATC 2 cut(s) 269, 395
DpnII GATC 2 cut(s) 267, 393
DraI TTTAAA 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Ecl136II GAGCTC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 75, 300
Eco24I GRGCYC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 169
Eco47III AGCGCT 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 236
EcoRV GATATC 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 75, 300
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 2 cut(s) 75, 300
FaeI CATG 5 cut(s) 155, 400, 419, 427, 492
FaqI GGGAC 2 cut(s) 155, 480
FatI CATG 5 cut(s) 151, 396, 415, 423, 488
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 249, 286, 478
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 3 cut(s) 249, 286, 478
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 351
GluI GCNGC 3 cut(s) 249, 286, 478
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 1 cut(s) 428
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 5 cut(s) 155, 400, 419, 427, 492
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 3 cut(s) 4, 61, 362
Hpy166II GTNNAC 1 cut(s) 341
Hpy188III TCNNGA 3 cut(s) 130, 152, 179
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 2 cut(s) 127, 229
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 7 cut(s) 192, 251, 288, 317, 368, 470, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 374, 425
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 5 cut(s) 155, 400, 419, 427, 492
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 267, 393
LmnI GCTCC 2 cut(s) 294, 302
LpnPI CCDG 6 cut(s) 19, 40, 218, 315, 462, 499
Lsp1109I GCAGC 3 cut(s) 235, 272, 489
LweI GCATC 2 cut(s) 113, 316
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 3 cut(s) 130, 519, 527
MalI GATC 2 cut(s) 269, 395
MbiI CCGCTC 1 cut(s) 19
MboI GATC 2 cut(s) 267, 393
MboII GAAGA 2 cut(s) 302, 345
MhlI GDGCHC 3 cut(s) 14, 299, 415
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 3 cut(s) 236, 323, 369
MluNI TGGCCA 1 cut(s) 428
MnlI CCTC 3 cut(s) 190, 284, 329
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
MseI TTAA 2 cut(s) 206, 599
Msp20I TGGCCA 1 cut(s) 428
MwoI GCNNNNNNNGC 3 cut(s) 294, 374, 425
NdeII GATC 2 cut(s) 267, 393
NlaIII CATG 5 cut(s) 155, 400, 419, 427, 492
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 492
PaeI GCATGC 1 cut(s) 492
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 3 cut(s) 4, 61, 362
PkrI GCNGC 3 cut(s) 250, 287, 479
Psp124BI GAGCTC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 2 cut(s) 194, 290
RsaI GTAC 2 cut(s) 231, 508
RsaNI GTAC 2 cut(s) 230, 507
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 206, 599
SatI GCNGC 3 cut(s) 249, 286, 478
Sau3AI GATC 2 cut(s) 267, 393
Sau96I GGNCC 1 cut(s) 169
SduI GDGCHC 3 cut(s) 14, 299, 415
SfaNI GCATC 2 cut(s) 113, 316
SfcI CTRYAG 2 cut(s) 190, 286
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 2 cut(s) 179, 387
SmoI CTYRAG 2 cut(s) 179, 387
SphI GCATGC 1 cut(s) 492
Sse9I AATT 3 cut(s) 236, 323, 369
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 299
StyI CCWWGG 2 cut(s) 75, 300
TaaI ACNGT 2 cut(s) 127, 229
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 236, 323, 369
TatI WGTACW 2 cut(s) 229, 506
TfiI GAWTC 3 cut(s) 4, 61, 362
Tru1I TTAA 2 cut(s) 206, 599
Tru9I TTAA 2 cut(s) 206, 599
TscAI CASTG 2 cut(s) 14, 199
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 3 cut(s) 248, 285, 477
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 575
TspRI CASTG 2 cut(s) 14, 199
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 492
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.