Rroxscaffold_3G00251320
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000416
Physical Location & Seq
Reverse (-)
45256945 .. 45258642
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251320.1

Sequence Viewer

Length: 342 bp
ATGGCTTCAGCAGGCTGCAAAAGCTTGGTGAAGGAGGCTTTGGGAGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGTCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACGCGAGGGACTGGAAGTCCAGGTGAATATAGTTTTCATTTATTTGACCTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.76

Weight (kDa)

6.82

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 95 7.9e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 97 2.3e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AclWI GGATC 4 cut(s) 142, 155, 204, 242
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 74, 208, 220
AhdI GACNNNNNGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 24, 112, 189
AluI AGCT 3 cut(s) 24, 112, 189
AlwI GGATC 4 cut(s) 142, 155, 204, 242
ApeKI GCWGC 2 cut(s) 15, 263
AsuHPI GGTGA 3 cut(s) 40, 86, 319
BamHI GGATCC 1 cut(s) 147
BauI CACGAG 1 cut(s) 238
BbvI GCAGC 2 cut(s) 2, 250
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 305
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 16, 264
BlsI GCNGC 2 cut(s) 17, 265
Bme1390I CCNGG 1 cut(s) 305
BmeRI GACNNNNNGTC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 2, 250
Bsh1236I CGCG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 147, 196, 234
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 4 cut(s) 142, 155, 204, 242
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 3 cut(s) 147, 196, 234
BssSI CACGAG 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 13, 63
BstDEI CTNAG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 3 cut(s) 150, 199, 237
BstMBI GATC 3 cut(s) 147, 196, 234
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 2, 250
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 13, 63
CviJI RGCY 9 cut(s) 5, 15, 24, 38, 61, 112, 157, 189, 278
CviKI_1 RGCY 9 cut(s) 5, 15, 24, 38, 61, 112, 157, 189, 278
DdeI CTNAG 1 cut(s) 190
DpnI GATC 3 cut(s) 149, 198, 236
DpnII GATC 3 cut(s) 147, 196, 234
DriI GACNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 231
Eam1105I GACNNNNNGTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaiI YATR 7 cut(s) 51, 166, 168, 174, 176, 314, 336
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 16, 264
Fsp4HI GCNGC 2 cut(s) 16, 264
FspBI CTAG 1 cut(s) 116
GluI GCNGC 2 cut(s) 16, 264
HindIII AAGCTT 2 cut(s) 22, 110
HphI GGTGA 3 cut(s) 40, 86, 319
Hpy188III TCNNGA 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 18, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 190
Kzo9I GATC 3 cut(s) 147, 196, 234
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 89, 196, 281, 290, 317
Lsp1109I GCAGC 2 cut(s) 2, 250
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 243
MalI GATC 3 cut(s) 149, 198, 236
MboI GATC 3 cut(s) 147, 196, 234
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 8 cut(s) 28, 38, 61, 137, 187, 234, 234, 283
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 3 cut(s) 147, 196, 234
NlaIV GGNNCC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 17, 265
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 2 cut(s) 16, 264
Sau3AI GATC 3 cut(s) 147, 196, 234
ScrFI CCNGG 1 cut(s) 305
SetI ASST 9 cut(s) 26, 49, 72, 114, 191, 215, 245, 309, 335
SfcI CTRYAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 1 cut(s) 74
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 230
TasI AATT 1 cut(s) 74
TseI GCWGC 2 cut(s) 15, 263
TspDTI ATGAA 2 cut(s) 183, 310
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.