Rorug07G0096900
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000416
Physical Location & Seq
Forward (+)
7616589 .. 7618382
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0096900.1

Sequence Viewer

Length: 237 bp
ATGGATCCTTCAGTCATGCAAAACCCTGAGCTGGCCAGCATCATAAATCAAGAGCAGCAAAGGGCGATGGTCAATGAGATGGTGGGAAAGCTTACGAGTGCATGCTGGGACAAGTGCATCACCTCTACACCTGGGAGCAAGTTCAGTTCCAGTGAAACAGCTTGCCTCTCAAACTGTGCCCGGCGCTATTTGGATATGAGTATGATTATTATGAAGCGTTTTCAGAACATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

78

Amino Acids

8.81

Weight (kDa)

7.64

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Tim10_DDP PF02953 14 - 76 2.2e-26 Tim10/DDP family zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 31
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 31, 91, 161
AluI AGCT 3 cut(s) 31, 91, 161
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 61, 73
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 132, 181
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 132, 181
BmsI GCATC 2 cut(s) 48, 126
Bpu10I CCTNAGC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 176
BstC8I GCNNGC 4 cut(s) 33, 37, 103, 163
BstDEI CTNAG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 105, 232
BstSCI CCNGG 2 cut(s) 130, 179
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 4 cut(s) 33, 37, 103, 163
CfoI GCGC 1 cut(s) 186
CviAII CATG 3 cut(s) 16, 102, 229
CviJI RGCY 4 cut(s) 31, 35, 91, 161
CviKI_1 RGCY 4 cut(s) 31, 35, 91, 161
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 19, 105, 232
FaiI YATR 7 cut(s) 17, 44, 103, 197, 203, 212, 230
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 15, 101, 228
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 56
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 181
HhaI GCGC 1 cut(s) 186
Hin1II CATG 3 cut(s) 19, 105, 232
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 89
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 19, 101, 117, 232
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 19, 105, 232
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 8 cut(s) 17, 39, 49, 91, 117, 144, 163, 194
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 48, 126
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 2 cut(s) 133, 176
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 132, 181
MvaI CCWGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 19, 105, 232
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 105, 232
PaeI GCATGC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 132, 181
SduI GDGCHC 1 cut(s) 181
SetI ASST 5 cut(s) 33, 93, 125, 133, 163
SfaNI GCATC 2 cut(s) 48, 126
SphI GCATGC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 130, 179
TaaI ACNGT 1 cut(s) 176
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 157
XceI RCATGY 2 cut(s) 105, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.