Rh1DG188100
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
37645524 .. 37647221
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG188100.1

Sequence Viewer

Length: 366 bp
ATGAAGTGTTTCTACTACTTTAAGGAAAAGTCTAAGAGCAGGGAACAAAGATCAGCTCCTGAGCTAAAAGACCAAAGCAGCTCTGATTATTCAGGAGCTGATAGGGTCATTAAGTCTTCCTGCTCAGCAAATTCACCGCGCGGTATACCAGAATTGTATGAAGAAAAGGCTCATAATTTAAGGGTGTTTACTTTCCAAGAGCTGAGGCAAGCAACAAATGATTTCAGTAGGTTGCTTAAGATTGGAGAAGGTGGATTTGGAAATGTCTATAAGGGTTCAATTAAGCCTGCTGAATCCAAGGGCGATCCAGTTGTGGTCGCCATTAAAAAACTCAACAACGACGGCTTACAGGCAGGCGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

9.08

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 139, 141
AciI CCGC 2 cut(s) 137, 141
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 130
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 5 cut(s) 56, 64, 81, 98, 202
AluI AGCT 5 cut(s) 56, 64, 81, 98, 202
AlwI GGATC 1 cut(s) 299
AlwNI CAGNNNCTG 2 cut(s) 59, 98
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 126
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 358
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 108
Bpu10I CCTNAGC 2 cut(s) 60, 203
Bpu1102I GCTNAGC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 51, 138, 194
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 2 cut(s) 139, 141
Bsp143I GATC 3 cut(s) 50, 304, 358
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 137, 141
BspCNI CTCAG 3 cut(s) 52, 137, 195
BspFNI CGCG 2 cut(s) 139, 141
BspPI GGATC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 50, 304, 358
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 210, 288, 355
BstDEI CTNAG 4 cut(s) 33, 60, 124, 203
BstFNI CGCG 2 cut(s) 139, 141
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 53, 307, 361
BstMBI GATC 3 cut(s) 50, 304, 358
BstUI CGCG 2 cut(s) 139, 141
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 108
BstZ17I GTATAC 1 cut(s) 146
Cac8I GCNNGC 3 cut(s) 210, 288, 355
CaiI CAGNNNCTG 2 cut(s) 59, 98
CfoI GCGC 1 cut(s) 141
CviJI RGCY 8 cut(s) 56, 64, 81, 98, 170, 202, 286, 345
CviKI_1 RGCY 8 cut(s) 56, 64, 81, 98, 170, 202, 286, 345
DdeI CTNAG 4 cut(s) 33, 60, 124, 203
DpnI GATC 3 cut(s) 52, 306, 360
DpnII GATC 3 cut(s) 50, 304, 358
Eco130I CCWWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaiI YATR 4 cut(s) 146, 159, 174, 270
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 146, 189
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 59, 93
Hpy8I GTNNAC 2 cut(s) 146, 189
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 242
HpyF3I CTNAG 4 cut(s) 33, 60, 124, 203
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 50, 304, 358
LmnI GCTCC 2 cut(s) 61, 95
LpnPI CCDG 9 cut(s) 25, 72, 78, 133, 162, 300, 321, 335, 339
Lsp1109I GCAGC 1 cut(s) 90
MalI GATC 3 cut(s) 52, 306, 360
MboI GATC 3 cut(s) 50, 304, 358
MboII GAAGA 2 cut(s) 108, 173
MluCI AATT 4 cut(s) 130, 152, 175, 279
MnlI CCTC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 21, 111, 179, 237, 282, 324
MspCI CTTAAG 1 cut(s) 236
MvnI CGCG 2 cut(s) 139, 141
NdeII GATC 3 cut(s) 50, 304, 358
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 80
PstNI CAGNNNCTG 2 cut(s) 59, 98
SaqAI TTAA 6 cut(s) 21, 111, 179, 237, 282, 324
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 3 cut(s) 50, 304, 358
SetI ASST 7 cut(s) 58, 66, 83, 100, 204, 233, 253
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 4 cut(s) 130, 152, 175, 279
SsiI CCGC 2 cut(s) 137, 141
StyI CCWWGG 1 cut(s) 297
TasI AATT 4 cut(s) 130, 152, 175, 279
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 6 cut(s) 21, 111, 179, 237, 282, 324
Tru9I TTAA 6 cut(s) 21, 111, 179, 237, 282, 324
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 17, 174
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.