Rh7BG225300
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000416
Physical Location & Seq
Reverse (-)
19414981 .. 19417086
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG225300.1

Sequence Viewer

Length: 333 bp
ATGACAGAAGATGACCCAGCACCACTTATATCATGTGGTCATAAAGCATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAGAGGGATTCAACGGCTACTGGTATATGAATATATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGAACTGGAAGTCCAGGTGAATATAGTTTTCCTTTATTTGACCTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.56

Weight (kDa)

5.43

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 14 - 95 9.9e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 14 - 95 1.2e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 4 cut(s) 65, 143, 199, 211
AjnI CCWGG 2 cut(s) 106, 294
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 2 cut(s) 103, 180
AluI AGCT 2 cut(s) 103, 180
AlwI GGATC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 77, 310
BauI CACGAG 2 cut(s) 229, 278
BbvI GCAGC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 2 cut(s) 108, 296
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 108, 296
BmrFI CCNGG 2 cut(s) 108, 296
BpuEI CTTGAG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 156, 291
BseBI CCWGG 2 cut(s) 108, 296
BseDI CCNNGG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 156, 291
BseXI GCAGC 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 94
Bsp143I GATC 2 cut(s) 187, 225
BspPI GGATC 1 cut(s) 233
BsrI ACTGG 2 cut(s) 156, 291
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 187, 225
BssSI CACGAG 2 cut(s) 229, 278
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 2 cut(s) 229, 278
Bst2UI CCWGG 2 cut(s) 108, 296
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 181
BstKTI GATC 2 cut(s) 190, 228
BstMBI GATC 2 cut(s) 187, 225
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 108, 296
BstSCI CCNGG 2 cut(s) 106, 294
BstV1I GCAGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 2 cut(s) 33, 48
CviJI RGCY 6 cut(s) 52, 103, 148, 180, 206, 269
CviKI_1 RGCY 6 cut(s) 52, 103, 148, 180, 206, 269
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 189, 227
DpnII GATC 2 cut(s) 187, 225
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 106, 294
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 36, 51
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 177, 209
FatI CATG 2 cut(s) 32, 47
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
GsaI CCCAGC 1 cut(s) 20
Hin1II CATG 2 cut(s) 36, 51
HindIII AAGCTT 2 cut(s) 101, 178
HinfI GANTC 1 cut(s) 139
HphI GGTGA 2 cut(s) 77, 310
Hpy188III TCNNGA 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 2 cut(s) 36, 51
Kzo9I GATC 2 cut(s) 187, 225
LpnPI CCDG 9 cut(s) 30, 80, 93, 120, 137, 187, 272, 281, 308
Lsp1109I GCAGC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 234
MalI GATC 2 cut(s) 189, 227
MboI GATC 2 cut(s) 187, 225
MboII GAAGA 3 cut(s) 20, 197, 209
MluCI AATT 1 cut(s) 65
MnlI CCTC 5 cut(s) 52, 128, 225, 225, 274
MspR9I CCNGG 2 cut(s) 108, 296
MvaI CCWGG 2 cut(s) 108, 296
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 187, 225
NlaIII CATG 2 cut(s) 36, 51
PfeI GAWTC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 2 cut(s) 106, 294
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 106, 294
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 187, 225
ScrFI CCNGG 2 cut(s) 108, 296
SetI ASST 6 cut(s) 63, 105, 182, 236, 300, 326
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 106, 294
StyI CCWWGG 1 cut(s) 221
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 139
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.