RchiOBHm_Chr7g0206611
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24243736 .. 24247642
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18491

Sequence Viewer

Length: 1113 bp
ATGCATCTTTCCCTTCAAATTCAAATCCAAGAAGAAACGAAAGGAGTCAAAATCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTAACTCCGAATTGTACAAAGAGAAGGAGCAGAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGGGAAGGGGGATTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATTTTGGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCAGTATTCTATTAATGCAGCTCGAAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTGGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAACAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAGAACCCCAAGTTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

370

Amino Acids

41.77

Weight (kDa)

9.55

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 57 - 335 9.9e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 59 - 337 3.9e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
Acc65I GGTACC 1 cut(s) 1040
AccB1I GGYRCC 1 cut(s) 1040
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 1 cut(s) 821
AclWI GGATC 6 cut(s) 391, 404, 453, 491, 772, 884
AcoI YGGCCR 2 cut(s) 812, 980
AcsI RAATTY 2 cut(s) 18, 118
AcuI CTGAAG 1 cut(s) 151
AfaI GTAC 4 cut(s) 101, 661, 854, 1042
AfiI CCNNNNNNNGG 3 cut(s) 236, 352, 1107
AhdI GACNNNNNGTC 1 cut(s) 548
AjnI CCWGG 1 cut(s) 552
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
Alw21I GWGCWC 2 cut(s) 147, 591
Alw26I GTCTC 1 cut(s) 897
AlwI GGATC 6 cut(s) 391, 404, 453, 491, 772, 884
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 4 cut(s) 644, 724, 812, 980
ApeKI GCWGC 4 cut(s) 512, 701, 923, 954
ApoI RAATTY 2 cut(s) 18, 118
AseI ATTAAT 1 cut(s) 918
Asp700I GAANNNNTTC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 1040
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 3 cut(s) 335, 568, 665
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 1040
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 2 cut(s) 487, 536
Bbv12I GWGCWC 2 cut(s) 147, 591
BbvI GCAGC 4 cut(s) 499, 688, 935, 941
BccI CCATC 3 cut(s) 377, 735, 743
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 2 cut(s) 365, 636
BfmI CTRYAG 2 cut(s) 378, 858
BfuAI ACCTGC 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 944
BglII AGATCT 1 cut(s) 1005
BisI GCNGC 4 cut(s) 513, 702, 924, 955
BlsI GCNGC 4 cut(s) 514, 703, 925, 956
Bme1390I CCNGG 1 cut(s) 554
BmeRI GACNNNNNGTC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 398, 1042
BmrFI CCNGG 1 cut(s) 554
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 2 cut(s) 13, 1079
BmuI ACTGGG 1 cut(s) 795
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 897
BsaJI CCNNGG 1 cut(s) 479
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 352, 1107
Bse118I RCCGGY 2 cut(s) 810, 978
Bse1I ACTGG 3 cut(s) 549, 790, 907
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 601, 735
BseLI CCNNNNNNNGG 3 cut(s) 236, 352, 1107
BseMII CTCAG 2 cut(s) 160, 633
BseNI ACTGG 3 cut(s) 549, 790, 907
BseXI GCAGC 4 cut(s) 499, 688, 935, 941
BshFI GGCC 4 cut(s) 646, 726, 814, 982
BshNI GGYRCC 1 cut(s) 1040
BsiHKAI GWGCWC 2 cut(s) 147, 591
BsiSI CCGG 3 cut(s) 60, 811, 979
BslFI GGGAC 2 cut(s) 555, 700
BslI CCNNNNNNNGG 3 cut(s) 236, 352, 1107
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 2 cut(s) 555, 700
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 4 cut(s) 646, 726, 814, 982
Bso31I GGTCTC 1 cut(s) 897
Bsp1286I GDGCHC 2 cut(s) 147, 591
Bsp13I TCCGGA 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
BspACI CCGC 1 cut(s) 821
BspANI GGCC 4 cut(s) 646, 726, 814, 982
BspCNI CTCAG 2 cut(s) 159, 632
BspEI TCCGGA 1 cut(s) 59
BspLI GGNNCC 2 cut(s) 398, 1042
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 6 cut(s) 391, 404, 453, 491, 772, 884
BspT107I GGYRCC 1 cut(s) 1040
BspTNI GGTCTC 1 cut(s) 897
BsrFI RCCGGY 2 cut(s) 810, 978
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 3 cut(s) 549, 790, 907
BssAI RCCGGY 2 cut(s) 810, 978
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
BssSI CACGAG 2 cut(s) 487, 536
BssT1I CCWWGG 1 cut(s) 479
Bst2BI CACGAG 2 cut(s) 487, 536
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 659, 852, 866
Bst6I CTCTTC 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 312, 633, 1017
BstDEI CTNAG 5 cut(s) 146, 439, 619, 799, 899
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 2 cut(s) 601, 735
BstKTI GATC 6 cut(s) 399, 448, 486, 780, 892, 1008
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 944
BstNI CCWGG 1 cut(s) 554
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 552
BstSFI CTRYAG 2 cut(s) 378, 858
BstV1I GCAGC 4 cut(s) 499, 688, 935, 941
BstX2I RGATCY 4 cut(s) 396, 777, 889, 1005
BstYI RGATCY 4 cut(s) 396, 777, 889, 1005
BsuRI GGCC 4 cut(s) 646, 726, 814, 982
BtsCI GGATG 2 cut(s) 601, 735
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 684, 783
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 3 cut(s) 312, 633, 1017
Cfr10I RCCGGY 2 cut(s) 810, 978
Cfr13I GGNCC 1 cut(s) 644
Csp6I GTAC 4 cut(s) 100, 660, 853, 1041
CviAII CATG 2 cut(s) 665, 880
CviQI GTAC 4 cut(s) 100, 660, 853, 1041
DdeI CTNAG 5 cut(s) 146, 439, 619, 799, 899
DpnI GATC 6 cut(s) 398, 447, 485, 779, 891, 1007
DpnII GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
DriI GACNNNNNGTC 1 cut(s) 548
EaeI YGGCCR 2 cut(s) 812, 980
Eam1104I CTCTTC 1 cut(s) 480
Eam1105I GACNNNNNGTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 897
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 145
EcoO65I GGTNACC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 2 cut(s) 668, 883
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 2 cut(s) 555, 700
FatI CATG 2 cut(s) 664, 879
Fnu4HI GCNGC 4 cut(s) 513, 702, 924, 955
FokI GGATG 2 cut(s) 608, 722
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 4 cut(s) 513, 702, 924, 955
FspBI CTAG 2 cut(s) 365, 636
GluI GCNGC 4 cut(s) 513, 702, 924, 955
HaeIII GGCC 4 cut(s) 646, 726, 814, 982
HapII CCGG 3 cut(s) 60, 811, 979
Hin1II CATG 2 cut(s) 668, 883
HindIII AAGCTT 3 cut(s) 182, 359, 830
HinfI GANTC 6 cut(s) 45, 81, 152, 277, 991, 1028
HpaII CCGG 3 cut(s) 60, 811, 979
HphI GGTGA 3 cut(s) 335, 568, 665
Hpy166II GTNNAC 1 cut(s) 1054
Hpy188I TCNGA 2 cut(s) 94, 622
Hpy188III TCNNGA 4 cut(s) 60, 487, 566, 1009
Hpy8I GTNNAC 1 cut(s) 1054
HpyAV CCTTC 5 cut(s) 23, 103, 118, 185, 635
HpyCH4III ACNGT 3 cut(s) 659, 852, 866
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 6 cut(s) 4, 178, 314, 860, 923, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 944
HpyF3I CTNAG 5 cut(s) 146, 439, 619, 799, 899
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 2 cut(s) 668, 883
Kpn2I TCCGGA 1 cut(s) 59
KpnI GGTACC 1 cut(s) 1044
Kzo9I GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
LmnI GCTCC 4 cut(s) 62, 112, 435, 823
Lsp1109I GCAGC 4 cut(s) 499, 688, 935, 941
LweI GCATC 2 cut(s) 13, 1079
MaeI CTAG 2 cut(s) 365, 636
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 3 cut(s) 492, 653, 743
MalI GATC 6 cut(s) 398, 447, 485, 779, 891, 1007
MboI GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
MboII GAAGA 2 cut(s) 44, 467
MflI RGATCY 4 cut(s) 396, 777, 889, 1005
MhlI GDGCHC 2 cut(s) 147, 591
MluCI AATT 8 cut(s) 18, 95, 118, 252, 323, 933, 1060, 1082
MlyI GAGTC 2 cut(s) 54, 75
MmeI TCCRAC 2 cut(s) 424, 606
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 4 cut(s) 87, 606, 918, 1106
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 3 cut(s) 60, 811, 979
MspR9I CCNGG 1 cut(s) 554
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 944
NdeII GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
NlaIII CATG 2 cut(s) 668, 883
NlaIV GGNNCC 2 cut(s) 398, 1042
NmuCI GTSAC 2 cut(s) 653, 743
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 973
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 4 cut(s) 152, 277, 991, 1028
PkrI GCNGC 4 cut(s) 514, 703, 925, 956
PleI GAGTC 2 cut(s) 53, 75
PpsI GAGTC 2 cut(s) 53, 75
PshBI ATTAAT 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 552
PspEI GGTNACC 1 cut(s) 653
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 398, 1042
PspPI GGNCC 1 cut(s) 644
PstI CTGCAG 1 cut(s) 862
PsuI RGATCY 4 cut(s) 396, 777, 889, 1005
RsaI GTAC 4 cut(s) 101, 661, 854, 1042
RsaNI GTAC 4 cut(s) 100, 660, 853, 1041
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 4 cut(s) 87, 606, 918, 1106
SatI GCNGC 4 cut(s) 513, 702, 924, 955
Sau3AI GATC 6 cut(s) 396, 445, 483, 777, 889, 1005
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 2 cut(s) 54, 75
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 2 cut(s) 147, 591
SfaNI GCATC 2 cut(s) 13, 1079
SfcI CTRYAG 2 cut(s) 378, 858
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
Sse9I AATT 8 cut(s) 18, 95, 118, 252, 323, 933, 1060, 1082
SsiI CCGC 1 cut(s) 821
SspMI CTAG 2 cut(s) 365, 636
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 3 cut(s) 659, 852, 866
TaiI ACGT 1 cut(s) 588
TaqI TCGA 4 cut(s) 565, 671, 717, 928
TasI AATT 8 cut(s) 18, 95, 118, 252, 323, 933, 1060, 1082
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 4 cut(s) 152, 277, 991, 1028
Tru1I TTAA 4 cut(s) 87, 606, 918, 1106
Tru9I TTAA 4 cut(s) 87, 606, 918, 1106
TscAI CASTG 2 cut(s) 684, 790
TseFI GTSAC 2 cut(s) 653, 743
TseI GCWGC 4 cut(s) 512, 701, 923, 954
Tsp45I GTSAC 2 cut(s) 653, 743
TspDTI ATGAA 2 cut(s) 432, 1004
TspRI CASTG 2 cut(s) 684, 790
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 2 cut(s) 18, 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 365, 636
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.