RchiOBHm_Chr6g0259701
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000416
Physical Location & Seq
Reverse (-)
14935758 .. 14939352
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23287

Sequence Viewer

Length: 561 bp
ATGTGGAGAGAATATCATCATTTGCAGTCTACCCTTTGTCTGACAAATAGTGCTTGGATCACGAGGTTACAAATAATACTTGGTGCTGCTCAAAGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGATGATTTCAAATCTTCCAACGTGCTTTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTTGGGCTTGCTAAAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCATTGGTAGGGACTTATGGGTATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTCCTGTATGAGATCCTCACTGGGAGGCGTGTGTTAGAAAGACACCGGCCAACAGTGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATTCACTCCTGAGAGACCAGTATTGTATTAATGTAGCTCGGAAAATCGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATTCGAAAGGCAGGCCAACAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

21.3

Weight (kDa)

8.71

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 21 - 185 3.8e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 26 - 185 4.2e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 29
AclWI GGATC 2 cut(s) 65, 337
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 2 cut(s) 226, 419
AgsI TTSAA 2 cut(s) 139, 284
AhdI GACNNNNNGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 181, 397, 491, 519
AluI AGCT 4 cut(s) 181, 397, 491, 519
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 2 cut(s) 65, 337
AoxI GGCC 4 cut(s) 209, 289, 377, 545
ApeKI GCWGC 3 cut(s) 86, 266, 519
ApoI RAATTY 1 cut(s) 532
AseI ATTAAT 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 209, 331
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 536
AvaII GGWCC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BauI CACGAG 2 cut(s) 61, 110
BbvI GCAGC 3 cut(s) 73, 253, 506
BccI CCATC 2 cut(s) 300, 308
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 3 cut(s) 87, 267, 520
BlsI GCNGC 3 cut(s) 88, 268, 521
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 331
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 209, 331
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 3 cut(s) 123, 355, 472
BseBI CCWGG 1 cut(s) 128
BseGI GGATG 3 cut(s) 136, 166, 300
BseMII CTCAG 2 cut(s) 198, 455
BseNI ACTGG 3 cut(s) 123, 355, 472
BseXI GCAGC 3 cut(s) 73, 253, 506
BshFI GGCC 4 cut(s) 211, 291, 379, 547
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 129, 265
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 2 cut(s) 129, 265
BsnI GGCC 4 cut(s) 211, 291, 379, 547
Bso31I GGTCTC 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 536
Bsp143I GATC 2 cut(s) 57, 342
BspANI GGCC 4 cut(s) 211, 291, 379, 547
BspCNI CTCAG 2 cut(s) 197, 456
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 2 cut(s) 65, 337
BspT104I TTCGAA 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 375
BsrI ACTGG 3 cut(s) 123, 355, 472
BssAI RCCGGY 1 cut(s) 375
BssMI GATC 2 cut(s) 57, 342
BssSI CACGAG 2 cut(s) 61, 110
Bst2BI CACGAG 2 cut(s) 61, 110
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 224, 385, 417, 431
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 198, 545
BstDEI CTNAG 2 cut(s) 184, 464
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 3 cut(s) 136, 166, 300
BstKTI GATC 2 cut(s) 60, 345
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 2 cut(s) 57, 342
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNI CCWGG 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 3 cut(s) 73, 253, 506
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuRI GGCC 4 cut(s) 211, 291, 379, 547
BtsCI GGATG 3 cut(s) 136, 166, 300
BtsIMutI CAGTG 2 cut(s) 348, 390
Cac8I GCNNGC 2 cut(s) 198, 545
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 209, 331
Csp6I GTAC 2 cut(s) 225, 418
CviAII CATG 2 cut(s) 230, 445
CviQI GTAC 2 cut(s) 225, 418
DdeI CTNAG 2 cut(s) 184, 464
DpnI GATC 2 cut(s) 59, 344
DpnII GATC 2 cut(s) 57, 342
DriI GACNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 377
Eam1105I GACNNNNNGTC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 233, 448
FaiI YATR 8 cut(s) 231, 258, 264, 279, 306, 316, 339, 446
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 2 cut(s) 129, 265
FatI CATG 2 cut(s) 229, 444
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 87, 267, 520
FokI GGATG 3 cut(s) 143, 173, 287
Fsp4HI GCNGC 3 cut(s) 87, 267, 520
GluI GCNGC 3 cut(s) 87, 267, 520
HaeIII GGCC 4 cut(s) 211, 291, 379, 547
HapII CCGG 1 cut(s) 376
Hin1II CATG 2 cut(s) 233, 448
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 455
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 42, 187, 495
Hpy188III TCNNGA 2 cut(s) 61, 463
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 4 cut(s) 224, 385, 417, 431
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 25, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 2 cut(s) 184, 464
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 233, 448
Kzo9I GATC 2 cut(s) 57, 342
LmnI GCTCC 1 cut(s) 388
Lsp1109I GCAGC 3 cut(s) 73, 253, 506
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 66, 218, 308
MalI GATC 2 cut(s) 59, 344
MboI GATC 2 cut(s) 57, 342
MboII GAAGA 1 cut(s) 135
MflI RGATCY 1 cut(s) 342
MluCI AATT 2 cut(s) 532, 556
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 57, 106, 157, 348, 356
MseI TTAA 2 cut(s) 171, 483
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 509
NdeII GATC 2 cut(s) 57, 342
NlaIII CATG 2 cut(s) 233, 448
NmuCI GTSAC 2 cut(s) 218, 308
NspV TTCGAA 1 cut(s) 536
PfeI GAWTC 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 88, 268, 521
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 2 cut(s) 209, 331
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 342
RsaI GTAC 2 cut(s) 226, 419
RsaNI GTAC 2 cut(s) 225, 418
SaqAI TTAA 2 cut(s) 171, 483
SatI GCNGC 3 cut(s) 87, 267, 520
Sau3AI GATC 2 cut(s) 57, 342
Sau96I GGNCC 2 cut(s) 209, 331
ScrFI CCNGG 1 cut(s) 128
SetI ASST 6 cut(s) 68, 153, 183, 399, 493, 521
SfcI CTRYAG 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 536
SinI GGWCC 1 cut(s) 331
Sse9I AATT 2 cut(s) 532, 556
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 4 cut(s) 224, 385, 417, 431
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 236, 536
TasI AATT 2 cut(s) 532, 556
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 2 cut(s) 171, 483
Tru9I TTAA 2 cut(s) 171, 483
TscAI CASTG 2 cut(s) 355, 390
TseFI GTSAC 2 cut(s) 218, 308
TseI GCWGC 3 cut(s) 86, 266, 519
Tsp45I GTSAC 2 cut(s) 218, 308
TspRI CASTG 2 cut(s) 355, 390
VpaK11BI GGWCC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.