RchiOBHm_Chr7g0207071
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24521897 .. 24523108
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18531

Sequence Viewer

Length: 339 bp
ATGGCTTGCAGAGGTTCAATTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAAGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGTTATTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.85

Weight (kDa)

6.82

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 6 - 110 6e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 7 - 110 9.2e-17 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 85, 98, 147, 185
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 4 cut(s) 18, 151, 163, 268
AhdI GACNNNNNGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 55, 132, 310
AluI AGCT 3 cut(s) 55, 132, 310
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 4 cut(s) 85, 98, 147, 185
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 29, 262
BamHI GGATCC 1 cut(s) 90
BauI CACGAG 2 cut(s) 181, 230
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 90, 139, 177
BspCNI CTCAG 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 4 cut(s) 85, 98, 147, 185
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 3 cut(s) 90, 139, 177
BssSI CACGAG 2 cut(s) 181, 230
BssT1I CCWWGG 1 cut(s) 173
Bst2BI CACGAG 2 cut(s) 181, 230
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 133, 313
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 3 cut(s) 93, 142, 180
BstMBI GATC 3 cut(s) 90, 139, 177
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 7
CviJI RGCY 9 cut(s) 5, 55, 100, 132, 158, 221, 304, 310, 325
CviKI_1 RGCY 9 cut(s) 5, 55, 100, 132, 158, 221, 304, 310, 325
DdeI CTNAG 2 cut(s) 133, 313
DpnI GATC 3 cut(s) 92, 141, 179
DpnII GATC 3 cut(s) 90, 139, 177
DriI GACNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 174
Eam1105I GACNNNNNGTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaiI YATR 5 cut(s) 109, 111, 117, 119, 256
FaqI GGGAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 53
HphI GGTGA 2 cut(s) 29, 262
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 181, 260
HpyAV CCTTC 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 9
HpyF3I CTNAG 2 cut(s) 133, 313
HpySE526I ACGT 1 cut(s) 279
Kzo9I GATC 3 cut(s) 90, 139, 177
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 32, 139, 224, 233, 260
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 186
MalI GATC 3 cut(s) 92, 141, 179
MboI GATC 3 cut(s) 90, 139, 177
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 118, 300
MnlI CCTC 7 cut(s) 5, 130, 177, 177, 226, 283, 286
MseI TTAA 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
NdeII GATC 3 cut(s) 90, 139, 177
NlaIV GGNNCC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 90
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 90, 139, 177
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 285
SetI ASST 7 cut(s) 16, 57, 134, 188, 252, 282, 312
SfcI CTRYAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 173
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 259
TasI AATT 1 cut(s) 18
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.