Rmu_sc0014912.1_g000004
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014912.1
OG0000416
Physical Location & Seq
Reverse (-)
10467 .. 15545
5079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014912.1_g000004.1.cds

Sequence Viewer

Length: 870 bp
atgaagtgtttctactactttaaggaaaagtctaagagcagggaacaaagatcagctcctgagctaaaagaccaaagcagctctgattattcaggagctgatagggtcattaagtcttcctgctcagcaaattcaccgcgcggtataccagaattgtatgaagaaaaggctcataatttaagggtgtttactttccaagagctgaggcaagcaacaaatgatttcagtaggttgcttaagattggagaaggtggatttggaaatgtctataagggttcaattaagcctgctgagtccaagggcgatccagttgtggtcgccattaaaaagctcaacaacgacggcttacagggtcacaaacaatgggtggcagaagttcagtttctaagtgttgtggagcacccgaatcttgtcaaactaataggatactgtgctgtggatggagaaagaggaattcaaagactactcgtctatgaatatatgccaaacagaagtttagaagatcatctatttaacaggacatacccaactattccttgggagacaagattacagataatactgggagctgctcaaggattagcttatcttcatgaaggattggaagttcaggaagaggccgcgacaggctctcggggtcttaaggaggagagtggttggagacgtctgctagagtctggtttttgggctgccggattaccagaccattgtagcatgcaaatttggtgggcggtgagatggttgttatggtctcctgcctggggaggccactggattaacaaggcggtgacggacggcttcttggaggctccagatttggtcgacgggggttgggaatgcagggtttgggcagtgcctctgccttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

289

Amino Acids

32.7

Weight (kDa)

6.41

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 667
AccI GTMKAC 2 cut(s) 145, 822
AccII CGCG 3 cut(s) 139, 141, 623
AciI CCGC 5 cut(s) 137, 141, 621, 731, 785
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 3 cut(s) 130, 453, 720
AcyI GRCGYC 1 cut(s) 664
AfiI CCNNNNNNNGG 1 cut(s) 761
AflII CTTAAG 2 cut(s) 236, 641
AgsI TTSAA 2 cut(s) 279, 458
AhdI GACNNNNNGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 758
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AloI GAACNNNNNNTCC 2 cut(s) 591, 623
AluBI AGCT 8 cut(s) 56, 64, 81, 98, 202, 331, 569, 584
AluI AGCT 8 cut(s) 56, 64, 81, 98, 202, 331, 569, 584
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 3 cut(s) 536, 655, 756
AlwI GGATC 1 cut(s) 299
AlwNI CAGNNNCTG 2 cut(s) 59, 98
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 2 cut(s) 618, 766
ApeKI GCWGC 3 cut(s) 78, 569, 689
ApoI RAATTY 3 cut(s) 130, 453, 720
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 126, 745, 799
AvaI CYCGRG 1 cut(s) 633
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 90, 556, 676
BccI CCATC 2 cut(s) 434, 732
BceAI ACGGC 2 cut(s) 358, 811
BciT130I CCWGG 1 cut(s) 760
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 3 cut(s) 536, 655, 756
BfaI CTAG 1 cut(s) 671
BfrI CTTAAG 2 cut(s) 236, 641
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 4 cut(s) 79, 570, 621, 690
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 4 cut(s) 80, 571, 622, 691
Bme1390I CCNGG 1 cut(s) 760
BmeRI GACNNNNNGTC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 633
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 1 cut(s) 760
BmrI ACTGGG 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 795
Bpu10I CCTNAGC 2 cut(s) 60, 203
Bpu1102I GCTNAGC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 664
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 297, 536, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 3 cut(s) 308, 567, 776
BseBI CCWGG 1 cut(s) 760
BseDI CCNNGG 3 cut(s) 297, 536, 759
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMII CTCAG 4 cut(s) 51, 138, 194, 282
BseNI ACTGG 3 cut(s) 308, 567, 776
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 3 cut(s) 90, 556, 676
Bsh1236I CGCG 3 cut(s) 139, 141, 623
BshFI GGCC 2 cut(s) 620, 768
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 1 cut(s) 693
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 536, 655, 756
BsmBI CGTCTC 1 cut(s) 655
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 2 cut(s) 620, 768
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 3 cut(s) 50, 304, 502
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 5 cut(s) 137, 141, 621, 731, 785
BspANI GGCC 2 cut(s) 620, 768
BspCNI CTCAG 4 cut(s) 52, 137, 195, 283
BspFNI CGCG 3 cut(s) 139, 141, 623
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 810
BspPI GGATC 1 cut(s) 299
BspTI CTTAAG 2 cut(s) 236, 641
BspTNI GGTCTC 1 cut(s) 756
BsrI ACTGG 3 cut(s) 308, 567, 776
BssECI CCNNGG 3 cut(s) 297, 536, 759
BssMI GATC 3 cut(s) 50, 304, 502
BssNAI GTATAC 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 664
BssT1I CCWWGG 2 cut(s) 297, 536
Bst1107I GTATAC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 760
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 664
BstAFI CTTAAG 2 cut(s) 236, 641
BstC8I GCNNGC 3 cut(s) 210, 288, 716
BstDEI CTNAG 6 cut(s) 33, 60, 124, 203, 291, 386
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 3 cut(s) 139, 141, 623
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 53, 307, 505
BstMAI GTCTC 3 cut(s) 536, 655, 756
BstMBI GATC 3 cut(s) 50, 304, 502
BstNI CCWGG 1 cut(s) 760
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 758
BstUI CGCG 3 cut(s) 139, 141, 623
BstV1I GCAGC 3 cut(s) 90, 556, 676
BstV2I GAAGAC 1 cut(s) 108
BstZ17I GTATAC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 2 cut(s) 620, 768
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 2 cut(s) 769, 858
Cac8I GCNNGC 3 cut(s) 210, 288, 716
CaiI CAGNNNCTG 2 cut(s) 59, 98
CciI TCATGA 1 cut(s) 592
CfoI GCGC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 707, 742
CviAII CATG 2 cut(s) 593, 715
DdeI CTNAG 6 cut(s) 33, 60, 124, 203, 291, 386
DpnI GATC 3 cut(s) 52, 306, 504
DpnII GATC 3 cut(s) 50, 304, 502
DriI GACNNNNNGTC 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 609
Eam1105I GACNNNNNGTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 609
Eco130I CCWWGG 2 cut(s) 297, 536
Eco31I GGTCTC 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 758
EcoT14I CCWWGG 2 cut(s) 297, 536
ErhI CCWWGG 2 cut(s) 297, 536
Esp3I CGTCTC 1 cut(s) 655
FaeI CATG 2 cut(s) 596, 718
FatI CATG 2 cut(s) 592, 714
FblI GTMKAC 2 cut(s) 145, 822
Fnu4HI GCNGC 4 cut(s) 79, 570, 621, 690
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 4 cut(s) 79, 570, 621, 690
FspBI CTAG 1 cut(s) 671
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 79, 570, 621, 690
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 2 cut(s) 620, 768
HapII CCGG 1 cut(s) 693
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 664
Hin1II CATG 2 cut(s) 596, 718
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HinfI GANTC 3 cut(s) 293, 406, 674
HpaII CCGG 1 cut(s) 693
HphI GGTGA 3 cut(s) 126, 745, 799
Hpy166II GTNNAC 3 cut(s) 146, 189, 823
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 5 cut(s) 59, 93, 593, 611, 812
Hpy8I GTNNAC 3 cut(s) 146, 189, 823
Hpy99I CGWCG 2 cut(s) 344, 827
HpyAV CCTTC 2 cut(s) 242, 590
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 2 cut(s) 718, 840
HpyF3I CTNAG 6 cut(s) 33, 60, 124, 203, 291, 386
HpySE526I ACGT 1 cut(s) 664
Hsp92I GRCGYC 1 cut(s) 664
Hsp92II CATG 2 cut(s) 596, 718
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 50, 304, 502
LmnI GCTCC 5 cut(s) 61, 95, 397, 566, 814
Lsp1109I GCAGC 3 cut(s) 90, 556, 676
MaeI CTAG 1 cut(s) 671
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 2 cut(s) 353, 787
MalI GATC 3 cut(s) 52, 306, 504
MboI GATC 3 cut(s) 50, 304, 502
MboII GAAGA 5 cut(s) 108, 173, 512, 581, 626
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 6 cut(s) 130, 152, 175, 279, 453, 720
MlyI GAGTC 2 cut(s) 302, 683
MmeI TCCRAC 1 cut(s) 638
MnlI CCTC 7 cut(s) 198, 443, 610, 640, 758, 799, 867
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 642, 777
MspCI CTTAAG 2 cut(s) 236, 641
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 1 cut(s) 760
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 1 cut(s) 760
MvnI CGCG 3 cut(s) 139, 141, 623
NdeII GATC 3 cut(s) 50, 304, 502
NlaIII CATG 2 cut(s) 596, 718
NlaIV GGNNCC 1 cut(s) 810
NmuCI GTSAC 2 cut(s) 353, 787
NspI RCATGY 1 cut(s) 718
PaeI GCATGC 1 cut(s) 718
PagI TCATGA 1 cut(s) 592
PctI GAATGC 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 4 cut(s) 80, 571, 622, 691
PleI GAGTC 2 cut(s) 301, 682
PpsI GAGTC 2 cut(s) 301, 682
Psp6I CCWGG 1 cut(s) 758
PspGI CCWGG 1 cut(s) 758
PspN4I GGNNCC 1 cut(s) 810
PstNI CAGNNNCTG 2 cut(s) 59, 98
SalI GTCGAC 1 cut(s) 821
SaqAI TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 642, 777
SatI GCNGC 4 cut(s) 79, 570, 621, 690
Sau3AI GATC 3 cut(s) 50, 304, 502
SchI GAGTC 2 cut(s) 302, 683
ScrFI CCNGG 1 cut(s) 760
SduI GDGCHC 1 cut(s) 402
SmlI CTYRAG 3 cut(s) 236, 573, 641
SmoI CTYRAG 3 cut(s) 236, 573, 641
SphI GCATGC 1 cut(s) 718
Sse9I AATT 6 cut(s) 130, 152, 175, 279, 453, 720
SsiI CCGC 5 cut(s) 137, 141, 621, 731, 785
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 1 cut(s) 758
StyI CCWWGG 2 cut(s) 297, 536
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 667
TaqI TCGA 1 cut(s) 822
TasI AATT 6 cut(s) 130, 152, 175, 279, 453, 720
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 642, 777
Tru9I TTAA 9 cut(s) 21, 111, 179, 237, 282, 324, 513, 642, 777
TscAI CASTG 2 cut(s) 776, 858
TseFI GTSAC 2 cut(s) 353, 787
TseI GCWGC 3 cut(s) 78, 569, 689
Tsp45I GTSAC 2 cut(s) 353, 787
TspDTI ATGAA 6 cut(s) 17, 174, 489, 581, 609, 855
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 2 cut(s) 776, 858
Vha464I CTTAAG 2 cut(s) 236, 641
XapI RAATTY 3 cut(s) 130, 453, 720
XceI RCATGY 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmiI GTMKAC 2 cut(s) 145, 822
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 671
ZraI GACGTC 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.