Rroxscaffold_3G00251310
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000416
Physical Location & Seq
Reverse (-)
45248389 .. 45255983
7595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251310.1

Sequence Viewer

Length: 504 bp
ATGGTTGTTCCTATCATCACAGCCACAATGCCACATGAGAAAGCTAGAAATGGAGCTGTCATCCAAGTTGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTCAGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGCGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCGGTATTCTATTAATGCAGCTCGAAAAATGGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTGGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.7

Weight (kDa)

9.81

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 132 4.4e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 30 - 134 1.5e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 70
AciI CCGC 1 cut(s) 212
AclWI GGATC 2 cut(s) 163, 275
AcoI YGGCCR 3 cut(s) 203, 327, 371
AfaI GTAC 2 cut(s) 245, 433
AfiI CCNNNNNNNGG 2 cut(s) 70, 498
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 6 cut(s) 44, 56, 223, 317, 345, 410
AluI AGCT 6 cut(s) 44, 56, 223, 317, 345, 410
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 2 cut(s) 163, 275
AoxI GGCC 4 cut(s) 115, 203, 327, 371
ApeKI GCWGC 3 cut(s) 92, 314, 345
AseI ATTAAT 1 cut(s) 309
AsiGI ACCGGT 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 329
BanI GGYRCC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 79, 326, 332
BccI CCATC 2 cut(s) 126, 134
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 335
BglII AGATCT 1 cut(s) 396
BisI GCNGC 3 cut(s) 93, 315, 346
BlsI GCNGC 3 cut(s) 94, 316, 347
BmiI GGNNCC 1 cut(s) 433
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 498
Bse118I RCCGGY 3 cut(s) 201, 297, 369
Bse1I ACTGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 60, 126
BseLI CCNNNNNNNGG 2 cut(s) 70, 498
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 3 cut(s) 79, 326, 332
BshFI GGCC 4 cut(s) 117, 205, 329, 373
BshNI GGYRCC 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 297
BsiSI CCGG 3 cut(s) 202, 298, 370
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 70, 498
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 4 cut(s) 117, 205, 329, 373
Bso31I GGTCTC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 168, 280, 396
BspACI CCGC 1 cut(s) 212
BspANI GGCC 4 cut(s) 117, 205, 329, 373
BspLI GGNNCC 1 cut(s) 433
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 2 cut(s) 163, 275
BspT107I GGYRCC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 288
BsrFI RCCGGY 3 cut(s) 201, 297, 369
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 3 cut(s) 201, 297, 369
BssMI GATC 3 cut(s) 168, 280, 396
Bst4CI ACNGT 2 cut(s) 243, 257
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 190, 290
BstF5I GGATG 2 cut(s) 60, 126
BstKTI GATC 3 cut(s) 171, 283, 399
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 168, 280, 396
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 79, 326, 332
BstX2I RGATCY 3 cut(s) 168, 280, 396
BstYI RGATCY 3 cut(s) 168, 280, 396
BsuRI GGCC 4 cut(s) 117, 205, 329, 373
BtsCI GGATG 2 cut(s) 60, 126
BtsIMutI CAGTG 2 cut(s) 157, 174
Cac8I GCNNGC 1 cut(s) 408
Cfr10I RCCGGY 3 cut(s) 201, 297, 369
Csp6I GTAC 2 cut(s) 244, 432
CspAI ACCGGT 1 cut(s) 297
CviAII CATG 2 cut(s) 35, 271
CviQI GTAC 2 cut(s) 244, 432
DdeI CTNAG 2 cut(s) 190, 290
DpnI GATC 3 cut(s) 170, 282, 398
DpnII GATC 3 cut(s) 168, 280, 396
EaeI YGGCCR 3 cut(s) 203, 327, 371
Eco31I GGTCTC 1 cut(s) 288
FaeI CATG 2 cut(s) 38, 274
FaiI YATR 9 cut(s) 36, 84, 90, 105, 132, 142, 165, 272, 413
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 34, 270
Fnu4HI GCNGC 3 cut(s) 93, 315, 346
FokI GGATG 2 cut(s) 47, 113
Fsp4HI GCNGC 3 cut(s) 93, 315, 346
FspBI CTAG 1 cut(s) 45
GluI GCNGC 3 cut(s) 93, 315, 346
HaeIII GGCC 4 cut(s) 117, 205, 329, 373
HapII CCGG 3 cut(s) 202, 298, 370
Hin1II CATG 2 cut(s) 38, 274
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 382, 419
HpaII CCGG 3 cut(s) 202, 298, 370
Hpy188III TCNNGA 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 243, 257
HpyCH4V TGCA 3 cut(s) 251, 314, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 190, 290
Hsp92II CATG 2 cut(s) 38, 274
KpnI GGTACC 1 cut(s) 435
Kzo9I GATC 3 cut(s) 168, 280, 396
LmnI GCTCC 2 cut(s) 53, 214
Lsp1109I GCAGC 3 cut(s) 79, 326, 332
LweI GCATC 1 cut(s) 470
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 170, 282, 398
MboI GATC 3 cut(s) 168, 280, 396
MflI RGATCY 3 cut(s) 168, 280, 396
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 2 cut(s) 451, 473
MluNI TGGCCA 1 cut(s) 329
MnlI CCTC 3 cut(s) 174, 182, 492
Mox20I TGGCCA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 329
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 202, 298, 370
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 3 cut(s) 168, 280, 396
NlaIII CATG 2 cut(s) 38, 274
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 134
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 2 cut(s) 382, 419
PflMI CCANNNNNTGG 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 297
PkrI GCNGC 3 cut(s) 94, 316, 347
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 433
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 3 cut(s) 168, 280, 396
RsaI GTAC 2 cut(s) 245, 433
RsaNI GTAC 2 cut(s) 244, 432
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 93, 315, 346
Sau3AI GATC 3 cut(s) 168, 280, 396
SetI ASST 8 cut(s) 46, 58, 225, 319, 347, 390, 412, 503
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 2 cut(s) 451, 473
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 243, 257
TaqI TCGA 2 cut(s) 108, 319
TasI AATT 2 cut(s) 451, 473
TfiI GAWTC 2 cut(s) 382, 419
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 157, 181
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 3 cut(s) 92, 314, 345
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 2 cut(s) 157, 181
Van91I CCANNNNNTGG 1 cut(s) 70
VspI ATTAAT 1 cut(s) 309
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.