Rroxscaffold_3G00252190
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000416
Physical Location & Seq
Reverse (-)
46233704 .. 46236019
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252190.1

Sequence Viewer

Length: 594 bp
ATGTCTTCTATCGGTCAAGTCACGGAAGTTCTGTGGTATACATTAGTTAACGACCCTACATGTTCTGTGGTATATGACAATTGTGGACCTTGGAATCCATCTGGTGCTGGAACTTGCTCGAAAACCATTCCTAAAGTGAACGAGGTTCAATTTCTCGGTGTGGTAAATCACCCAAAGCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAGAGGGATTCAACGGCTATTGGTATATGAATATATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTAAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGAACTGAAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTAGATGAGGGCGTTAAGCCGAAGCTCTCAGACTTTGAGCTTGCTGGAGAGGTGCCAAAGGGTGACCGTACTCATGTATCGACAGCGGTAGTAGGGTTTTATGGATTACCTTCTAACTGGCGCATAAGCGCCTCATCACCAATTCACTACCGTCTTCCAATCTCCCTTGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.96

Weight (kDa)

7.68

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 46 - 163 4.7e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 46 - 165 8.4e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 503
AclWI GGATC 1 cut(s) 317
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 4 cut(s) 149, 227, 283, 400
AjnI CCWGG 2 cut(s) 190, 378
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
AluBI AGCT 5 cut(s) 178, 187, 264, 442, 457
AluI AGCT 5 cut(s) 178, 187, 264, 442, 457
Alw21I GWGCWC 1 cut(s) 417
AlwI GGATC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 338
AspLEI GCGC 2 cut(s) 540, 548
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 4 cut(s) 161, 394, 491, 546
AvaII GGWCC 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanI GGYRCC 1 cut(s) 469
BauI CACGAG 2 cut(s) 313, 362
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 192, 380
BfoI RGCGCY 1 cut(s) 549
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 192, 380
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 192, 380
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 89, 305, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 539
BseBI CCWGG 2 cut(s) 192, 380
BseDI CCNNGG 3 cut(s) 89, 305, 583
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 2 cut(s) 271, 309
BspACI CCGC 1 cut(s) 503
BspCNI CTCAG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 3 cut(s) 89, 305, 583
BssMI GATC 2 cut(s) 271, 309
BssNAI GTATAC 1 cut(s) 39
BssSI CACGAG 2 cut(s) 313, 362
BssT1I CCWWGG 3 cut(s) 89, 305, 583
Bst1107I GTATAC 1 cut(s) 39
Bst2BI CACGAG 2 cut(s) 313, 362
Bst2UI CCWGG 2 cut(s) 192, 380
Bst4CI ACNGT 2 cut(s) 485, 569
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 3 cut(s) 265, 418, 445
BstEII GGTNACC 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 2 cut(s) 540, 548
BstKTI GATC 2 cut(s) 274, 312
BstMBI GATC 2 cut(s) 271, 309
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 2 cut(s) 192, 380
BstNSI RCATGY 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 190, 378
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 563
BstZ17I GTATAC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 2 cut(s) 540, 548
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 486
CviAII CATG 2 cut(s) 60, 491
CviJI RGCY 9 cut(s) 178, 187, 232, 264, 290, 353, 436, 442, 457
CviKI_1 RGCY 9 cut(s) 178, 187, 232, 264, 290, 353, 436, 442, 457
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 265, 418, 445
DpnI GATC 2 cut(s) 273, 311
DpnII GATC 2 cut(s) 271, 309
DraI TTTAAA 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 3 cut(s) 89, 305, 583
Eco47I GGWCC 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 479
EcoRII CCWGG 2 cut(s) 190, 378
EcoT14I CCWWGG 3 cut(s) 89, 305, 583
ErhI CCWWGG 3 cut(s) 89, 305, 583
FaeI CATG 2 cut(s) 63, 494
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 59, 490
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
GlaI GCGC 2 cut(s) 539, 547
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 549
HhaI GCGC 2 cut(s) 540, 548
Hin1II CATG 2 cut(s) 63, 494
Hin6I GCGC 2 cut(s) 538, 546
HinP1I GCGC 2 cut(s) 538, 546
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 2 cut(s) 185, 262
HinfI GANTC 2 cut(s) 94, 223
HpaI GTTAAC 1 cut(s) 49
HphI GGTGA 4 cut(s) 161, 394, 491, 546
Hpy166II GTNNAC 4 cut(s) 39, 49, 86, 139
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 313, 392
Hpy8I GTNNAC 4 cut(s) 39, 49, 86, 139
HpyAV CCTTC 1 cut(s) 537
HpyCH4III ACNGT 2 cut(s) 485, 569
HpyCH4IV ACGT 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 265, 418, 445
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 2 cut(s) 63, 494
HspAI GCGC 2 cut(s) 538, 546
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 271, 309
Lsp1109I GCAGC 1 cut(s) 325
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 3 cut(s) 19, 318, 479
MalI GATC 2 cut(s) 273, 311
MboI GATC 2 cut(s) 271, 309
MboII GAAGA 3 cut(s) 281, 293, 563
MfeI CAATTG 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 3 cut(s) 79, 149, 558
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 9 cut(s) 136, 212, 309, 309, 358, 415, 418, 460, 559
MseI TTAA 3 cut(s) 48, 293, 432
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 192, 380
MunI CAATTG 1 cut(s) 79
MvaI CCWGG 2 cut(s) 192, 380
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 2 cut(s) 271, 309
NlaIII CATG 2 cut(s) 63, 494
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 2 cut(s) 19, 479
NspI RCATGY 1 cut(s) 63
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 2 cut(s) 94, 223
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 1 cut(s) 340
PscI ACATGT 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 190, 378
PspEI GGTNACC 1 cut(s) 479
PspGI CCWGG 2 cut(s) 190, 378
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 48, 293, 432
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 271, 309
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 192, 380
SduI GDGCHC 1 cut(s) 417
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
Sse9I AATT 3 cut(s) 79, 149, 558
SsiI CCGC 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 190, 378
StyI CCWWGG 3 cut(s) 89, 305, 583
TaaI ACNGT 2 cut(s) 485, 569
TaiI ACGT 1 cut(s) 414
TaqI TCGA 3 cut(s) 119, 391, 497
TasI AATT 3 cut(s) 79, 149, 558
TfiI GAWTC 2 cut(s) 94, 223
Tru1I TTAA 3 cut(s) 48, 293, 432
Tru9I TTAA 3 cut(s) 48, 293, 432
TseFI GTSAC 2 cut(s) 19, 479
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 19, 479
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 86
XceI RCATGY 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.