Rh7BG227500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000416
Physical Location & Seq
Forward (+)
19711316 .. 19714594
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG227500.1

Sequence Viewer

Length: 843 bp
ATGAAGTGTTTCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAGTCAAAATCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTAACTCCGGTATTAGACCGTGCCTCGAAATCTCTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACTAATGGCTTCAGCAGGTTGCAAAAGCTTGGTGAAGGAGGCTTCGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTACTCCAATTTTGGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTGGGTGCTGCTCAAGGATTGGCTTATTTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAATGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

280

Amino Acids

31.38

Weight (kDa)

9.5

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 236 2.2e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 243 1.6e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 58
AclWI GGATC 5 cut(s) 439, 452, 501, 539, 813
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 3 cut(s) 149, 295, 709
AfiI CCNNNNNNNGG 2 cut(s) 284, 400
AgsI TTSAA 9 cut(s) 22, 172, 204, 325, 371, 505, 517, 622, 760
AhdI GACNNNNNGTC 1 cut(s) 596
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 7 cut(s) 56, 193, 232, 336, 409, 486, 664
AluI AGCT 7 cut(s) 56, 193, 232, 336, 409, 486, 664
Alw21I GWGCWC 2 cut(s) 195, 639
AlwI GGATC 5 cut(s) 439, 452, 501, 539, 813
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 2 cut(s) 692, 765
ApeKI GCWGC 2 cut(s) 560, 742
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 2 cut(s) 8, 176
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 5 cut(s) 117, 248, 383, 616, 713
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BamHI GGATCC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 2 cut(s) 535, 584
Bbv12I GWGCWC 2 cut(s) 195, 639
BbvI GCAGC 2 cut(s) 547, 729
BccI CCATC 3 cut(s) 425, 776, 784
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 602
BfaI CTAG 2 cut(s) 413, 684
BfmI CTRYAG 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 561, 743
BlsI GCNGC 2 cut(s) 562, 744
Bme1390I CCNGG 1 cut(s) 602
BmeRI GACNNNNNGTC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 602
BmrI ACTGGG 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 836
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 2 cut(s) 58, 91
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 400
Bse1I ACTGG 2 cut(s) 597, 831
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 2 cut(s) 649, 776
BseLI CCNNNNNNNGG 2 cut(s) 284, 400
BseMII CTCAG 2 cut(s) 208, 681
BseNI ACTGG 2 cut(s) 597, 831
BseXI GCAGC 2 cut(s) 547, 729
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 2 cut(s) 694, 767
BsiHKAI GWGCWC 2 cut(s) 195, 639
BsiSI CCGG 2 cut(s) 59, 92
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 284, 400
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 2 cut(s) 694, 767
Bsp1286I GDGCHC 2 cut(s) 195, 639
Bsp13I TCCGGA 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 4 cut(s) 444, 493, 531, 818
BspANI GGCC 2 cut(s) 694, 767
BspCNI CTCAG 2 cut(s) 207, 680
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 446
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 5 cut(s) 439, 452, 501, 539, 813
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 2 cut(s) 597, 831
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 4 cut(s) 444, 493, 531, 818
BssSI CACGAG 2 cut(s) 535, 584
BssT1I CCWWGG 1 cut(s) 527
Bst2BI CACGAG 2 cut(s) 535, 584
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 2 cut(s) 104, 707
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 360, 681
BstDEI CTNAG 4 cut(s) 194, 487, 667, 840
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 2 cut(s) 649, 776
BstKTI GATC 4 cut(s) 447, 496, 534, 821
BstMBI GATC 4 cut(s) 444, 493, 531, 818
BstNI CCWGG 1 cut(s) 602
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 547, 729
BstX2I RGATCY 2 cut(s) 444, 818
BstYI RGATCY 2 cut(s) 444, 818
BsuRI GGCC 2 cut(s) 694, 767
BtsCI GGATG 2 cut(s) 649, 776
BtsIMutI CAGTG 1 cut(s) 824
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 360, 681
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 3 cut(s) 148, 294, 708
CviAII CATG 1 cut(s) 713
CviQI GTAC 3 cut(s) 148, 294, 708
DdeI CTNAG 4 cut(s) 194, 487, 667, 840
DpnI GATC 4 cut(s) 446, 495, 533, 820
DpnII GATC 4 cut(s) 444, 493, 531, 818
DriI GACNNNNNGTC 1 cut(s) 596
Eam1104I CTCTTC 1 cut(s) 528
Eam1105I GACNNNNNGTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 1 cut(s) 716
FalI AAGNNNNNCTT 3 cut(s) 28, 342, 374
FaqI GGGAC 1 cut(s) 603
FatI CATG 1 cut(s) 712
Fnu4HI GCNGC 2 cut(s) 561, 743
FokI GGATG 2 cut(s) 656, 763
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 561, 743
FspBI CTAG 2 cut(s) 413, 684
GluI GCNGC 2 cut(s) 561, 743
GsaI CCCAGC 1 cut(s) 557
HaeIII GGCC 2 cut(s) 694, 767
HapII CCGG 2 cut(s) 59, 92
Hin1II CATG 1 cut(s) 716
HindIII AAGCTT 2 cut(s) 230, 407
HinfI GANTC 4 cut(s) 44, 80, 200, 325
HpaII CCGG 2 cut(s) 59, 92
HphI GGTGA 5 cut(s) 117, 248, 383, 616, 713
Hpy188I TCNGA 1 cut(s) 670
Hpy188III TCNNGA 4 cut(s) 59, 250, 535, 614
HpyAV CCTTC 6 cut(s) 28, 132, 151, 166, 233, 683
HpyCH4III ACNGT 2 cut(s) 104, 707
HpyCH4V TGCA 2 cut(s) 226, 362
HpyF3I CTNAG 4 cut(s) 194, 487, 667, 840
Hsp92II CATG 1 cut(s) 716
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 4 cut(s) 444, 493, 531, 818
LmnI GCTCC 3 cut(s) 61, 160, 483
Lsp1109I GCAGC 2 cut(s) 547, 729
MaeI CTAG 2 cut(s) 413, 684
MaeIII GTNAC 3 cut(s) 540, 701, 784
MalI GATC 4 cut(s) 446, 495, 533, 820
MboI GATC 4 cut(s) 444, 493, 531, 818
MboII GAAGA 1 cut(s) 515
MflI RGATCY 2 cut(s) 444, 818
MhlI GDGCHC 2 cut(s) 195, 639
MluCI AATT 4 cut(s) 143, 166, 300, 371
MlyI GAGTC 2 cut(s) 53, 74
MmeI TCCRAC 1 cut(s) 472
MroI TCCGGA 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 8, 176
MseI TTAA 2 cut(s) 86, 654
MspI CCGG 2 cut(s) 59, 92
MspR9I CCNGG 1 cut(s) 602
MvaI CCWGG 1 cut(s) 602
NdeII GATC 4 cut(s) 444, 493, 531, 818
NlaIII CATG 1 cut(s) 716
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 2 cut(s) 701, 784
PdmI GAANNNNTTC 2 cut(s) 8, 176
PfeI GAWTC 2 cut(s) 200, 325
PkrI GCNGC 2 cut(s) 562, 744
PleI GAGTC 2 cut(s) 52, 74
PpsI GAGTC 2 cut(s) 52, 74
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 692
PsuI RGATCY 2 cut(s) 444, 818
RsaI GTAC 3 cut(s) 149, 295, 709
RsaNI GTAC 3 cut(s) 148, 294, 708
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 86, 654
SatI GCNGC 2 cut(s) 561, 743
Sau3AI GATC 4 cut(s) 444, 493, 531, 818
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 2 cut(s) 53, 74
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 2 cut(s) 195, 639
SfcI CTRYAG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 4 cut(s) 143, 166, 300, 371
SspMI CTAG 2 cut(s) 413, 684
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 104, 707
TaqI TCGA 3 cut(s) 110, 613, 719
TasI AATT 4 cut(s) 143, 166, 300, 371
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 200, 325
Tru1I TTAA 2 cut(s) 86, 654
Tru9I TTAA 2 cut(s) 86, 654
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 2 cut(s) 701, 784
TseI GCWGC 2 cut(s) 560, 742
Tsp45I GTSAC 2 cut(s) 701, 784
TspDTI ATGAA 2 cut(s) 17, 480
TspRI CASTG 1 cut(s) 831
XapI RAATTY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmnI GAANNNNTTC 2 cut(s) 8, 176
XspI CTAG 2 cut(s) 413, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.