Prupe.5G052200_v2.0.a1
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000416
Physical Location & Seq
Reverse (-)
5637684 .. 5643019
5336 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G052200.2

Sequence Viewer

Length: 1182 bp
ATGAAGTGCTTTTTTCCATTCAAGGACAAAACCAAGAGCAAGAAGCAAGGAGCACAATCCGCTCCAGAATTGAGAAACCAAAGCAAATCAAGCGATTTGGTTTTAGATCGTGCAACAAAATCTTCAAGTTCCTTACCATCACCAAGGAGCATACCAGAATTGTACAAAGAAAAGGAGCACAATTTGAGAGTTTTCTCTTATCAAGAGCTGAGGGAAGCAACAAATGGTTTCAACAGGTTGCTAAAGCTTGGGGAAGGAGGTTTCGGGAGTGTATATAAAGGAACAATTAGCCCTGAACATGGTCAAGGAAGTCCGATTGTAGTTGCCATTAAAAGGTTAAACCCGCGTAGCTTACAGGGTCATAAAGAATGGCTTGCGGAAGTTCAATTTCTTGGTGTCGTAAATCATCCAAATCTAGTAAAACTTTTAGGATATTGTTCTGTAGATGGAGAAAGAGGTATACAACGGCTACTGGTATATGAATATATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGCCCACAATGCCTTGGATGACAAGACTACAGGTTATGCTTGGTTCTGCTGAAGGATTGGCTTATCTACACCAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAATGTGCTATTGGATGAGCAATTCAGGGCAAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGACCAACGGGTGACCGCACTCATGTATCAACATCGGTGAGTGGAGGGGTGGTAGGGACTTATGGATATGCTGCCCCAGAATATATTGAAACAGGCCATCTTTCAACGCATAGTGATTTATGGAGTTTCGGTGTGGTGCTTTATGAGATCCTCACAGGCAGGCGTGTCTTGGACAAGAACCGCCCGCCAGCGGAACAGAAACTTCTTTATTGGGTTAAACAGTTCCCGGCTGACGGTAAAAGGTTCAGCATGATAATAGATCCATTGCTGAGAGGTCAGTATTCTCTTACTGCTGCTCGAAAACTTGCCAAGTTGGCAGATAGTTGTCTGAACAAGAATGCAAAAGACCGACCAACAATGAGTGAGGTGGTAGAGGTCTTGAAGCAAGCTCTACAAGATTCAGAAGCGGGAACCAGTTCTGAAAATAGAAGTTTTGAGGCATCTGGGTCTAAATTGGCTAAGCGGAAACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

394

Amino Acids

43.97

Weight (kDa)

9.5

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 460
AccII CGCG 1 cut(s) 346
AciI CCGC 9 cut(s) 60, 344, 377, 721, 886, 890, 896, 1112, 1168
AclWI GGATC 2 cut(s) 847, 959
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 5 cut(s) 299, 333, 607, 895, 938
AgsI TTSAA 9 cut(s) 22, 126, 232, 386, 520, 637, 794, 810, 1087
AhdI GACNNNNNGTC 1 cut(s) 611
AjnI CCWGG 2 cut(s) 600, 615
AluBI AGCT 6 cut(s) 208, 247, 351, 501, 679, 1094
AluI AGCT 6 cut(s) 208, 247, 351, 501, 679, 1094
Alw21I GWGCWC 2 cut(s) 55, 180
AlwI GGATC 2 cut(s) 847, 959
AlwNI CAGNNNCTG 1 cut(s) 607
AoxI GGCC 1 cut(s) 799
ApeKI GCWGC 2 cut(s) 776, 998
Asp700I GAANNNNTTC 1 cut(s) 1120
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 4 cut(s) 132, 631, 728, 754
AvaII GGWCC 1 cut(s) 707
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
Bbv12I GWGCWC 2 cut(s) 55, 180
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 763, 985
BccI CCATC 3 cut(s) 145, 440, 810
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 2 cut(s) 602, 617
BcnI CCSGG 1 cut(s) 932
BfaI CTAG 2 cut(s) 416, 699
BfmI CTRYAG 2 cut(s) 441, 557
BglI GCCNNNNNGGC 1 cut(s) 1019
BisI GCNGC 2 cut(s) 777, 999
BlpI GCTNAGC 1 cut(s) 1164
BlsI GCNGC 2 cut(s) 778, 1000
Bme1390I CCNGG 3 cut(s) 602, 617, 932
Bme18I GGWCC 1 cut(s) 707
BmeRI GACNNNNNGTC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 1 cut(s) 1117
BmrFI CCNGG 3 cut(s) 602, 617, 932
BmsI GCATC 1 cut(s) 1154
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 1164
BpuMI CCSGG 1 cut(s) 932
BsaJI CCNNGG 3 cut(s) 143, 542, 601
BsaXI ACNNNNNCTCC 4 cut(s) 741, 771, 820, 850
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 333, 607, 895, 938
Bse1I ACTGG 3 cut(s) 477, 612, 1119
Bse3DI GCAATG 1 cut(s) 968
BseBI CCWGG 2 cut(s) 602, 617
BseDI CCNNGG 3 cut(s) 143, 542, 601
BseGI GGATG 3 cut(s) 406, 552, 664
BseLI CCNNNNNNNGG 5 cut(s) 299, 333, 607, 895, 938
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 3 cut(s) 200, 696, 965
BseNI ACTGG 3 cut(s) 477, 612, 1119
BseXI GCAGC 2 cut(s) 763, 985
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 801
BsiHKAI GWGCWC 2 cut(s) 55, 180
BsiSI CCGG 1 cut(s) 932
BslFI GGGAC 2 cut(s) 618, 775
BslI CCNNNNNNNGG 5 cut(s) 299, 333, 607, 895, 938
BsmFI GGGAC 2 cut(s) 618, 775
BsmI GAATGC 1 cut(s) 1048
BsnI GGCC 1 cut(s) 801
Bsp1286I GDGCHC 2 cut(s) 55, 180
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 106, 508, 852, 964
Bsp1720I GCTNAGC 1 cut(s) 1164
BspACI CCGC 9 cut(s) 60, 344, 377, 721, 886, 890, 896, 1112, 1168
BspANI GGCC 1 cut(s) 801
BspCNI CTCAG 3 cut(s) 201, 695, 966
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 1117
BspPI GGATC 2 cut(s) 847, 959
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 968
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 3 cut(s) 477, 612, 1119
BssECI CCNNGG 3 cut(s) 143, 542, 601
BssMI GATC 4 cut(s) 106, 508, 852, 964
BssNAI GTATAC 1 cut(s) 461
BssT1I CCWWGG 2 cut(s) 143, 542
Bst1107I GTATAC 1 cut(s) 461
Bst2UI CCWGG 2 cut(s) 602, 617
Bst4CI ACNGT 2 cut(s) 927, 941
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 6 cut(s) 375, 696, 866, 890, 894, 1092
BstDEI CTNAG 5 cut(s) 209, 502, 682, 974, 1164
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 3 cut(s) 406, 552, 664
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 4 cut(s) 109, 511, 855, 967
BstMBI GATC 4 cut(s) 106, 508, 852, 964
BstMWI GCNNNNNNNGC 4 cut(s) 59, 90, 538, 1019
BstNI CCWGG 2 cut(s) 602, 617
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 3 cut(s) 600, 615, 930
BstSFI CTRYAG 2 cut(s) 441, 557
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 763, 985
BstX2I RGATCY 2 cut(s) 852, 964
BstYI RGATCY 2 cut(s) 852, 964
BstZ17I GTATAC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 801
BtsCI GGATG 3 cut(s) 406, 552, 664
Cac8I GCNNGC 6 cut(s) 375, 696, 866, 890, 894, 1092
CaiI CAGNNNCTG 1 cut(s) 607
Cfr13I GGNCC 1 cut(s) 707
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 299, 728, 955
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 5 cut(s) 209, 502, 682, 974, 1164
DpnI GATC 4 cut(s) 108, 510, 854, 966
DpnII GATC 4 cut(s) 106, 508, 852, 964
DriI GACNNNNNGTC 1 cut(s) 611
Eam1105I GACNNNNNGTC 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 143, 542
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoRII CCWGG 2 cut(s) 600, 615
EcoT14I CCWWGG 2 cut(s) 143, 542
ErhI CCWWGG 2 cut(s) 143, 542
FaeI CATG 3 cut(s) 302, 731, 958
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 498, 530
FaqI GGGAC 2 cut(s) 618, 775
FatI CATG 3 cut(s) 298, 727, 954
FauI CCCGC 3 cut(s) 351, 897, 1105
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 777, 999
FokI GGATG 3 cut(s) 393, 559, 671
Fsp4HI GCNGC 2 cut(s) 777, 999
FspBI CTAG 2 cut(s) 416, 699
GluI GCNGC 2 cut(s) 777, 999
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 801
HapII CCGG 1 cut(s) 932
Hin1II CATG 3 cut(s) 302, 731, 958
HindIII AAGCTT 2 cut(s) 245, 499
HinfI GANTC 1 cut(s) 1103
HpaII CCGG 1 cut(s) 932
HphI GGTGA 4 cut(s) 132, 631, 728, 754
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 5 cut(s) 315, 685, 1035, 1108, 1126
Hpy188III TCNNGA 5 cut(s) 65, 203, 265, 629, 1084
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 248, 575, 698
HpyCH4III ACNGT 2 cut(s) 927, 941
HpyCH4V TGCA 2 cut(s) 113, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 90, 538, 1019
HpyF3I CTNAG 5 cut(s) 209, 502, 682, 974, 1164
Hsp92II CATG 3 cut(s) 302, 731, 958
Kzo9I GATC 4 cut(s) 106, 508, 852, 964
LmnI GCTCC 4 cut(s) 50, 67, 147, 175
Lsp1109I GCAGC 2 cut(s) 763, 985
LweI GCATC 1 cut(s) 1154
MaeI CTAG 2 cut(s) 416, 699
MaeIII GTNAC 1 cut(s) 716
MalI GATC 4 cut(s) 108, 510, 854, 966
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 106, 508, 852, 964
MboII GAAGA 2 cut(s) 114, 518
MflI RGATCY 2 cut(s) 852, 964
MhlI GDGCHC 2 cut(s) 55, 180
MluCI AATT 7 cut(s) 68, 158, 181, 285, 386, 665, 1157
MroXI GAANNNNTTC 1 cut(s) 1120
MseI TTAA 3 cut(s) 330, 338, 921
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 1 cut(s) 932
MspR9I CCNGG 3 cut(s) 602, 617, 932
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 2 cut(s) 602, 617
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 4 cut(s) 59, 90, 538, 1019
NciI CCSGG 1 cut(s) 932
NdeII GATC 4 cut(s) 106, 508, 852, 964
NlaIII CATG 3 cut(s) 302, 731, 958
NlaIV GGNNCC 1 cut(s) 1117
NmuCI GTSAC 1 cut(s) 716
PctI GAATGC 1 cut(s) 1048
PdmI GAANNNNTTC 1 cut(s) 1120
PfeI GAWTC 1 cut(s) 1103
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 2 cut(s) 778, 1000
Psp6I CCWGG 2 cut(s) 600, 615
PspEI GGTNACC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 600, 615
PspN4I GGNNCC 1 cut(s) 1117
PspPI GGNCC 1 cut(s) 707
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 852, 964
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 3 cut(s) 330, 338, 921
SatI GCNGC 2 cut(s) 777, 999
Sau3AI GATC 4 cut(s) 106, 508, 852, 964
Sau96I GGNCC 1 cut(s) 707
ScrFI CCNGG 3 cut(s) 602, 617, 932
SduI GDGCHC 2 cut(s) 55, 180
SfaNI GCATC 1 cut(s) 1154
SfcI CTRYAG 2 cut(s) 441, 557
SinI GGWCC 1 cut(s) 707
Sse9I AATT 7 cut(s) 68, 158, 181, 285, 386, 665, 1157
SsiI CCGC 9 cut(s) 60, 344, 377, 721, 886, 890, 896, 1112, 1168
SspMI CTAG 2 cut(s) 416, 699
StyD4I CCNGG 3 cut(s) 600, 615, 930
StyI CCWWGG 2 cut(s) 143, 542
TaaI ACNGT 2 cut(s) 927, 941
TaqI TCGA 2 cut(s) 628, 1003
TaqII GACCGA 1 cut(s) 1068
TasI AATT 7 cut(s) 68, 158, 181, 285, 386, 665, 1157
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 1103
Tru1I TTAA 3 cut(s) 330, 338, 921
Tru9I TTAA 3 cut(s) 330, 338, 921
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 776, 998
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 2 cut(s) 17, 495
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 1120
XspI CTAG 2 cut(s) 416, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.