RchiOBHm_Chr7g0206741
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24307184 .. 24310399
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18503

Sequence Viewer

Length: 714 bp
ATGTCAGTCACTACGCAGGCATGCATCTTTCCCTTCAAATTCAAATCCAAGAAGAAACGAAAGGAGTCAAAATCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTAACTCCGGTATTAGACCGTGCCTCGAAATCTCTACCATCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTAAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGGGAAGGGGGATTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATCTTGGTTGCCATAAAAAAGTTGAATCCACATAGCTTACAGGGTCATAAACAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAAGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGTTATTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

237

Amino Acids

26.91

Weight (kDa)

9.73

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 235 7.4e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 82 - 235 2.2e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 79
AclWI GGATC 4 cut(s) 460, 473, 522, 560
AcsI RAATTY 2 cut(s) 38, 187
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 305, 421
AgsI TTSAA 8 cut(s) 37, 43, 225, 346, 392, 526, 538, 643
AhdI GACNNNNNGTC 1 cut(s) 617
AjnI CCWGG 1 cut(s) 621
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 7 cut(s) 77, 214, 253, 357, 430, 507, 685
AluI AGCT 7 cut(s) 77, 214, 253, 357, 430, 507, 685
Alw21I GWGCWC 2 cut(s) 216, 660
AlwI GGATC 4 cut(s) 460, 473, 522, 560
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 2 cut(s) 38, 187
AsuHPI GGTGA 3 cut(s) 138, 404, 637
BamHI GGATCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 2 cut(s) 556, 605
Bbv12I GWGCWC 2 cut(s) 216, 660
BbvI GCAGC 1 cut(s) 568
BccI CCATC 2 cut(s) 151, 446
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 623
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 1 cut(s) 623
BmeRI GACNNNNNGTC 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 623
BmsI GCATC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 2 cut(s) 79, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 421
Bse1I ACTGG 1 cut(s) 618
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 1 cut(s) 670
BseLI CCNNNNNNNGG 2 cut(s) 305, 421
BseMII CTCAG 2 cut(s) 229, 702
BseNI ACTGG 1 cut(s) 618
BseXI GCAGC 1 cut(s) 568
BsiHKAI GWGCWC 2 cut(s) 216, 660
BsiSI CCGG 2 cut(s) 80, 113
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 2 cut(s) 305, 421
BsmFI GGGAC 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 216, 660
Bsp13I TCCGGA 1 cut(s) 79
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 3 cut(s) 465, 514, 552
BspCNI CTCAG 2 cut(s) 228, 701
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 4 cut(s) 460, 473, 522, 560
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 1 cut(s) 618
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 3 cut(s) 465, 514, 552
BssSI CACGAG 2 cut(s) 556, 605
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 2 cut(s) 556, 605
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 549
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 18, 22, 381
BstDEI CTNAG 3 cut(s) 215, 508, 688
BstF5I GGATG 1 cut(s) 670
BstKTI GATC 3 cut(s) 468, 517, 555
BstMBI GATC 3 cut(s) 465, 514, 552
BstNI CCWGG 1 cut(s) 623
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 621
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 568
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
BtsCI GGATG 1 cut(s) 670
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 3 cut(s) 18, 22, 381
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 21
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 215, 508, 688
DpnI GATC 3 cut(s) 467, 516, 554
DpnII GATC 3 cut(s) 465, 514, 552
DraI TTTAAA 1 cut(s) 192
DriI GACNNNNNGTC 1 cut(s) 617
Eam1104I CTCTTC 1 cut(s) 549
Eam1105I GACNNNNNGTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 1 cut(s) 24
FaqI GGGAC 1 cut(s) 624
FatI CATG 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 582
HapII CCGG 2 cut(s) 80, 113
Hin1II CATG 1 cut(s) 24
HindIII AAGCTT 2 cut(s) 251, 428
HinfI GANTC 4 cut(s) 65, 101, 221, 346
HpaII CCGG 2 cut(s) 80, 113
HphI GGTGA 3 cut(s) 138, 404, 637
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 3 cut(s) 80, 556, 635
HpyAV CCTTC 4 cut(s) 43, 172, 254, 456
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 3 cut(s) 24, 247, 383
HpyF3I CTNAG 3 cut(s) 215, 508, 688
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 465, 514, 552
LmnI GCTCC 3 cut(s) 82, 181, 504
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 7, 561
MalI GATC 3 cut(s) 467, 516, 554
MboI GATC 3 cut(s) 465, 514, 552
MboII GAAGA 2 cut(s) 64, 536
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 2 cut(s) 216, 660
MluCI AATT 4 cut(s) 38, 164, 187, 392
MlyI GAGTC 2 cut(s) 74, 95
MmeI TCCRAC 2 cut(s) 493, 675
MnlI CCTC 8 cut(s) 139, 379, 505, 552, 552, 601, 658, 661
Mph1103I ATGCAT 1 cut(s) 26
MroI TCCGGA 1 cut(s) 79
MseI TTAA 3 cut(s) 107, 191, 675
MspI CCGG 2 cut(s) 80, 113
MspR9I CCNGG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 623
NdeII GATC 3 cut(s) 465, 514, 552
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 221, 346
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 2 cut(s) 73, 95
PpsI GAGTC 2 cut(s) 73, 95
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 465
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 107, 191, 675
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 3 cut(s) 465, 514, 552
SchI GAGTC 2 cut(s) 74, 95
ScrFI CCNGG 1 cut(s) 623
SduI GDGCHC 2 cut(s) 216, 660
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 585
SmoI CTYRAG 1 cut(s) 585
SphI GCATGC 1 cut(s) 24
Sse9I AATT 4 cut(s) 38, 164, 187, 392
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 621
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 657
TaqI TCGA 2 cut(s) 131, 634
TasI AATT 4 cut(s) 38, 164, 187, 392
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 221, 346
Tru1I TTAA 3 cut(s) 107, 191, 675
Tru9I TTAA 3 cut(s) 107, 191, 675
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 501
XapI RAATTY 2 cut(s) 38, 187
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XspI CTAG 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.