Rmu_sc0008509.1_g000029
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008509.1
OG0000416
Physical Location & Seq
Forward (+)
126363 .. 127219
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008509.1_g000029.1.cds

Sequence Viewer

Length: 546 bp
atggtagatactggcttacctcacatggtgatagatcgagatttcaaatcctccaacgtgctcttggatgacgactttaagccgaagctctcagacttcaggcttgctagagaagagccaaaggggacttatggatatgctgccccagagtatgtcgaaacaggccatctttccatccatagtgacttatggagttttggtgtggtgctgtatgagatcctcactgggaggcgtgtcttagaaaggcaccggccaacaacggagcagaagcttctttattgggttagacagtaccctgcagacagtaaaaagttcagcatgataatagatccactcctaagagaccagtattctattaatgcagctcggaaaattgccaagttggcagatagctgcctgaacaagagtgcaaaagaccggccaacaatgaatcaggtggtagagatcttgaagcaagctatacaagattcacaaaagggtaccaactctgtaaataacaattttggggcatctgggtctaaattgggtaaaagaaccctaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.53

Weight (kDa)

9.25

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 2 cut(s) 246, 479
AclWI GGATC 2 cut(s) 211, 323
AcoI YGGCCR 2 cut(s) 251, 419
AcuI CTGAAG 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 28
AfaI GTAC 2 cut(s) 293, 481
AgsI TTSAA 2 cut(s) 46, 451
AluBI AGCT 5 cut(s) 88, 271, 365, 393, 458
AluI AGCT 5 cut(s) 88, 271, 365, 393, 458
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 2 cut(s) 211, 323
AoxI GGCC 3 cut(s) 163, 251, 419
ApeKI GCWGC 3 cut(s) 140, 362, 393
AseI ATTAAT 1 cut(s) 357
Asp718I GGTACC 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 40
BanI GGYRCC 2 cut(s) 246, 479
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 127, 374, 380
BccI CCATC 2 cut(s) 174, 182
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 444
BisI GCNGC 3 cut(s) 141, 363, 394
BlsI GCNGC 3 cut(s) 142, 364, 395
BmiI GGNNCC 2 cut(s) 248, 481
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse118I RCCGGY 2 cut(s) 249, 417
Bse1I ACTGG 3 cut(s) 16, 229, 346
BseGI GGATG 2 cut(s) 73, 174
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 3 cut(s) 16, 229, 346
BseXI GCAGC 3 cut(s) 127, 374, 380
BshFI GGCC 3 cut(s) 165, 253, 421
BshNI GGYRCC 2 cut(s) 246, 479
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 250, 418
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 3 cut(s) 165, 253, 421
Bso31I GGTCTC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 34, 216, 328, 444
BspANI GGCC 3 cut(s) 165, 253, 421
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 248, 481
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 2 cut(s) 211, 323
BspQI GCTCTTC 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 246, 479
BspTNI GGTCTC 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 249, 417
BsrI ACTGG 3 cut(s) 16, 229, 346
BssAI RCCGGY 2 cut(s) 249, 417
BssMI GATC 4 cut(s) 34, 216, 328, 444
Bst4CI ACNGT 2 cut(s) 291, 305
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 105, 456
BstDEI CTNAG 4 cut(s) 91, 238, 338, 539
BstF5I GGATG 2 cut(s) 73, 174
BstKTI GATC 4 cut(s) 37, 219, 331, 447
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 4 cut(s) 34, 216, 328, 444
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 127, 374, 380
BstX2I RGATCY 3 cut(s) 216, 328, 444
BstYI RGATCY 3 cut(s) 216, 328, 444
BsuRI GGCC 3 cut(s) 165, 253, 421
BtsCI GGATG 2 cut(s) 73, 174
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 105, 456
Cfr10I RCCGGY 2 cut(s) 249, 417
Csp6I GTAC 2 cut(s) 292, 480
CviAII CATG 2 cut(s) 25, 319
CviQI GTAC 2 cut(s) 292, 480
DdeI CTNAG 4 cut(s) 91, 238, 338, 539
DpnI GATC 4 cut(s) 36, 218, 330, 446
DpnII GATC 4 cut(s) 34, 216, 328, 444
DraIII CACNNNGTG 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 251, 419
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 82
FaeI CATG 2 cut(s) 28, 322
FaiI YATR 9 cut(s) 26, 132, 138, 153, 180, 190, 213, 320, 461
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 24, 318
Fnu4HI GCNGC 3 cut(s) 141, 363, 394
FokI GGATG 2 cut(s) 80, 161
Fsp4HI GCNGC 3 cut(s) 141, 363, 394
FspBI CTAG 1 cut(s) 108
GluI GCNGC 3 cut(s) 141, 363, 394
HaeIII GGCC 3 cut(s) 165, 253, 421
HapII CCGG 2 cut(s) 250, 418
Hin1II CATG 2 cut(s) 28, 322
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 430, 467
HpaII CCGG 2 cut(s) 250, 418
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 94, 369
Hpy188III TCNNGA 2 cut(s) 38, 448
HpyCH4III ACNGT 2 cut(s) 291, 305
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 299, 362, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 4 cut(s) 91, 238, 338, 539
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 28, 322
KpnI GGTACC 1 cut(s) 483
Kzo9I GATC 4 cut(s) 34, 216, 328, 444
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 3 cut(s) 127, 374, 380
LweI GCATC 1 cut(s) 518
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 36, 218, 330, 446
MboI GATC 4 cut(s) 34, 216, 328, 444
MboII GAAGA 1 cut(s) 125
MflI RGATCY 3 cut(s) 216, 328, 444
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 3 cut(s) 372, 499, 521
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 30, 61, 222, 230
MseI TTAA 2 cut(s) 78, 357
MspI CCGG 2 cut(s) 250, 418
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 4 cut(s) 34, 216, 328, 444
NlaIII CATG 2 cut(s) 28, 322
NlaIV GGNNCC 2 cut(s) 248, 481
NmuCI GTSAC 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 430, 467
PkrI GCNGC 3 cut(s) 142, 364, 395
PshBI ATTAAT 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 248, 481
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 3 cut(s) 216, 328, 444
RsaI GTAC 2 cut(s) 293, 481
RsaNI GTAC 2 cut(s) 292, 480
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 78, 357
SatI GCNGC 3 cut(s) 141, 363, 394
Sau3AI GATC 4 cut(s) 34, 216, 328, 444
SduI GDGCHC 1 cut(s) 63
SetI ASST 8 cut(s) 22, 60, 90, 273, 367, 395, 438, 460
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 372, 499, 521
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 291, 305
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 37, 156
TasI AATT 3 cut(s) 372, 499, 521
TfiI GAWTC 2 cut(s) 430, 467
Tru1I TTAA 2 cut(s) 78, 357
Tru9I TTAA 2 cut(s) 78, 357
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 3 cut(s) 140, 362, 393
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 229
VspI ATTAAT 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.