RchiOBHm_Chr7g0207181
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24617671 .. 24621294
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18541

Sequence Viewer

Length: 582 bp
ATGGCTTTAGCAGGTTGCAAAAGCTTGGGAAGGGGGATTTGGGAGTGTGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAGCAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGTTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAAGTGATATATCAAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCAGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCGCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTTACTGGGAGGCGTGTCTTAGAAAGGCACCGGCCAACAGCGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.84

Weight (kDa)

6.24

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 14 - 182 4.7e-31 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 18 - 188 4.1e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 1 cut(s) 561
AciI CCGC 1 cut(s) 575
AclWI GGATC 5 cut(s) 145, 158, 207, 245, 526
AcoI YGGCCR 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 364
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 77, 223, 328
AhdI GACNNNNNGTC 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 4 cut(s) 24, 115, 192, 370
AluI AGCT 4 cut(s) 24, 115, 192, 370
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 5 cut(s) 145, 158, 207, 245, 526
AoxI GGCC 3 cut(s) 398, 478, 566
ApeKI GCWGC 2 cut(s) 266, 455
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 89, 419
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BamHI GGATCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 561
BauI CACGAG 2 cut(s) 241, 290
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 253, 442
BccI CCATC 3 cut(s) 131, 489, 497
BceAI ACGGC 1 cut(s) 173
BfaI CTAG 2 cut(s) 119, 390
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 2
BisI GCNGC 2 cut(s) 267, 456
BlsI GCNGC 2 cut(s) 268, 457
BmeRI GACNNNNNGTC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 152, 563
BmrI ACTGGG 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 2 cut(s) 303, 544
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 355, 489
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 303, 544
BseXI GCAGC 2 cut(s) 253, 442
BshFI GGCC 3 cut(s) 400, 480, 568
BshNI GGYRCC 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 2 cut(s) 309, 454
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 309, 454
BsnI GGCC 3 cut(s) 400, 480, 568
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 4 cut(s) 150, 199, 237, 531
BspACI CCGC 1 cut(s) 575
BspANI GGCC 3 cut(s) 400, 480, 568
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 152, 563
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 5 cut(s) 145, 158, 207, 245, 526
BspT107I GGYRCC 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 564
BsrI ACTGG 2 cut(s) 303, 544
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 4 cut(s) 150, 199, 237, 531
BssSI CACGAG 2 cut(s) 241, 290
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 2 cut(s) 241, 290
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 66, 387
BstDEI CTNAG 3 cut(s) 193, 373, 553
BstEII GGTNACC 1 cut(s) 407
BstF5I GGATG 2 cut(s) 355, 489
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 153, 202, 240, 534
BstMBI GATC 4 cut(s) 150, 199, 237, 531
BstPI GGTNACC 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 253, 442
BstX2I RGATCY 2 cut(s) 150, 531
BstYI RGATCY 2 cut(s) 150, 531
BsuRI GGCC 3 cut(s) 400, 480, 568
BtsCI GGATG 2 cut(s) 355, 489
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 2 cut(s) 66, 387
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 419
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 3 cut(s) 193, 373, 553
DpnI GATC 4 cut(s) 152, 201, 239, 533
DpnII GATC 4 cut(s) 150, 199, 237, 531
DriI GACNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 566
Eam1104I CTCTTC 1 cut(s) 234
Eam1105I GACNNNNNGTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 407
EcoO65I GGTNACC 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 1 cut(s) 422
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 2 cut(s) 309, 454
FatI CATG 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 267, 456
FokI GGATG 2 cut(s) 362, 476
Fsp4HI GCNGC 2 cut(s) 267, 456
FspBI CTAG 2 cut(s) 119, 390
GlaI GCGC 1 cut(s) 459
GluI GCNGC 2 cut(s) 267, 456
HaeIII GGCC 3 cut(s) 400, 480, 568
HapII CCGG 1 cut(s) 565
HhaI GCGC 1 cut(s) 460
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 2 cut(s) 22, 113
HpaII CCGG 1 cut(s) 565
HphI GGTGA 2 cut(s) 89, 419
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 241, 320
HpyAV CCTTC 2 cut(s) 24, 389
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 18, 68
HpyF3I CTNAG 3 cut(s) 193, 373, 553
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 4 cut(s) 150, 199, 237, 531
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 92, 199, 284, 367, 462, 474, 525, 578
Lsp1109I GCAGC 2 cut(s) 253, 442
MaeI CTAG 2 cut(s) 119, 390
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 246, 407, 497
MalI GATC 4 cut(s) 152, 201, 239, 533
MboI GATC 4 cut(s) 150, 199, 237, 531
MboII GAAGA 1 cut(s) 221
MflI RGATCY 2 cut(s) 150, 531
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 178, 360
MnlI CCTC 9 cut(s) 64, 140, 190, 237, 237, 286, 343, 346, 537
MseI TTAA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 565
NdeII GATC 4 cut(s) 150, 199, 237, 531
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 152, 563
NmuCI GTSAC 2 cut(s) 407, 497
PkrI GCNGC 2 cut(s) 268, 457
PspEI GGTNACC 1 cut(s) 407
PspN4I GGNNCC 2 cut(s) 152, 563
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 2 cut(s) 150, 531
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 267, 456
Sau3AI GATC 4 cut(s) 150, 199, 237, 531
Sau96I GGNCC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 16, 26, 75, 117, 194, 248, 342, 372
SfcI CTRYAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 575
SspMI CTAG 2 cut(s) 119, 390
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 425, 471
TasI AATT 1 cut(s) 77
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 2 cut(s) 407, 497
TseI GCWGC 2 cut(s) 266, 455
Tsp45I GTSAC 2 cut(s) 407, 497
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XspI CTAG 2 cut(s) 119, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.