RchiOBHm_Chr7g0206781
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24332766 .. 24334636
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18507

Sequence Viewer

Length: 627 bp
ATGGTTCAATTTCTTGGTGTGGTAAGTCACCCAAATCTAGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGATCCAACGGCTATTGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACCAATAATGCTTGGTGCTGCTCAAGCTCGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGTTACATACATTGTTGACACTGTCACTTCAGTAACTGTCCATTATCTTGATGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTAAGCCGAAGCCACTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTATATGAGATCCTCACTGGAGGCGTGTCTTAGAAAGACACGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAGAAGTTCAGCATGATAATAGATCTGCTCCTGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATCGCCAAGCTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCGGGTAGTAGAGATATTGAAGCAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

208

Amino Acids

23.65

Weight (kDa)

9.67

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 1 cut(s) 395
AclWI GGATC 4 cut(s) 75, 88, 125, 348
AcoI YGGCCR 2 cut(s) 386, 554
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 428, 615
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 8, 103, 262, 586
AhdI GACNNNNNGTC 1 cut(s) 186
AluBI AGCT 7 cut(s) 46, 155, 406, 500, 517, 528, 592
AluI AGCT 7 cut(s) 46, 155, 406, 500, 517, 528, 592
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 4 cut(s) 75, 88, 125, 348
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 2 cut(s) 386, 554
ApeKI GCWGC 4 cut(s) 146, 497, 528, 589
AseI ATTAAT 1 cut(s) 492
Asp718I GGTACC 1 cut(s) 613
AsuHPI GGTGA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 613
BarI GAAGNNNNNNTAC 4 cut(s) 178, 210, 578, 610
BauI CACGAG 2 cut(s) 121, 174
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 4 cut(s) 133, 509, 515, 601
BccI CCATC 2 cut(s) 62, 319
BceAI ACGGC 2 cut(s) 103, 401
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 38, 50
BfmI CTRYAG 2 cut(s) 63, 432
BfrI CTTAAG 1 cut(s) 292
BglI GCCNNNNNGGC 1 cut(s) 518
BglII AGATCT 1 cut(s) 463
BisI GCNGC 4 cut(s) 147, 498, 529, 590
BlsI GCNGC 4 cut(s) 148, 499, 530, 591
BmeRI GACNNNNNGTC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 82, 615
BpmI CTGGAG 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bse118I RCCGGY 1 cut(s) 552
Bse1I ACTGG 4 cut(s) 187, 191, 366, 481
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 289, 311
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 4 cut(s) 187, 191, 366, 481
BseXI GCAGC 4 cut(s) 133, 509, 515, 601
BshFI GGCC 2 cut(s) 388, 556
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 553
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 2 cut(s) 388, 556
Bso31I GGTCTC 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 4 cut(s) 80, 117, 353, 463
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 388, 556
BspCNI CTCAG 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 82, 615
BspMAI CTGCAG 1 cut(s) 436
BspPI GGATC 4 cut(s) 75, 88, 125, 348
BspT107I GGYRCC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 552
BsrI ACTGG 4 cut(s) 187, 191, 366, 481
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 4 cut(s) 80, 117, 353, 463
BssSI CACGAG 2 cut(s) 121, 174
BssT1I CCWWGG 1 cut(s) 113
Bst2BI CACGAG 2 cut(s) 121, 174
Bst4CI ACNGT 4 cut(s) 214, 229, 426, 440
Bst6I CTCTTC 1 cut(s) 114
BstAFI CTTAAG 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 374, 473
BstEII GGTNACC 1 cut(s) 126
BstF5I GGATG 2 cut(s) 289, 311
BstKTI GATC 4 cut(s) 83, 120, 356, 466
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 4 cut(s) 80, 117, 353, 463
BstMWI GCNNNNNNNGC 2 cut(s) 152, 518
BstPI GGTNACC 1 cut(s) 126
BstSFI CTRYAG 2 cut(s) 63, 432
BstV1I GCAGC 4 cut(s) 133, 509, 515, 601
BstX2I RGATCY 3 cut(s) 80, 353, 463
BstYI RGATCY 3 cut(s) 80, 353, 463
BsuRI GGCC 2 cut(s) 388, 556
BtsCI GGATG 2 cut(s) 289, 311
BtsIMutI CAGTG 2 cut(s) 210, 359
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 552
Csp6I GTAC 2 cut(s) 427, 614
CviAII CATG 1 cut(s) 454
CviQI GTAC 2 cut(s) 427, 614
DdeI CTNAG 2 cut(s) 374, 473
DpnI GATC 4 cut(s) 82, 119, 355, 465
DpnII GATC 4 cut(s) 80, 117, 353, 463
DriI GACNNNNNGTC 1 cut(s) 186
EaeI YGGCCR 2 cut(s) 386, 554
Eam1104I CTCTTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 204
Eco91I GGTNACC 1 cut(s) 126
EcoO65I GGTNACC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 457
FaiI YATR 9 cut(s) 65, 199, 250, 317, 327, 348, 350, 455, 595
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 453
Fnu4HI GCNGC 4 cut(s) 147, 498, 529, 590
FokI GGATG 2 cut(s) 296, 298
Fsp4HI GCNGC 4 cut(s) 147, 498, 529, 590
FspBI CTAG 2 cut(s) 38, 50
GluI GCNGC 4 cut(s) 147, 498, 529, 590
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 2 cut(s) 388, 556
HapII CCGG 1 cut(s) 553
Hin1II CATG 1 cut(s) 457
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 2 cut(s) 44, 404
HinfI GANTC 2 cut(s) 565, 601
HpaII CCGG 1 cut(s) 553
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 159, 504
Hpy188III TCNNGA 4 cut(s) 121, 239, 254, 472
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4III ACNGT 4 cut(s) 214, 229, 426, 440
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 434, 497, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 518
HpyF3I CTNAG 2 cut(s) 374, 473
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 457
KpnI GGTACC 1 cut(s) 617
Kzo9I GATC 4 cut(s) 80, 117, 353, 463
LmnI GCTCC 2 cut(s) 397, 474
LpnPI CCDG 9 cut(s) 168, 204, 347, 444, 485, 494, 503, 545, 566
Lsp1109I GCAGC 4 cut(s) 133, 509, 515, 601
MaeI CTAG 2 cut(s) 38, 50
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 6 cut(s) 26, 126, 193, 214, 223, 319
MalI GATC 4 cut(s) 82, 119, 355, 465
MboI GATC 4 cut(s) 80, 117, 353, 463
MboII GAAGA 1 cut(s) 101
MflI RGATCY 3 cut(s) 80, 353, 463
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 2 cut(s) 108, 294
MnlI CCTC 8 cut(s) 71, 117, 117, 170, 277, 280, 358, 367
MseI TTAA 2 cut(s) 293, 492
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 292
MspI CCGG 1 cut(s) 553
Mva1269I GAATGC 1 cut(s) 547
MwoI GCNNNNNNNGC 2 cut(s) 152, 518
NdeII GATC 4 cut(s) 80, 117, 353, 463
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 2 cut(s) 82, 615
NmuCI GTSAC 3 cut(s) 26, 214, 319
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 2 cut(s) 565, 601
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 148, 499, 530, 591
PshBI ATTAAT 1 cut(s) 492
PspEI GGTNACC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 82, 615
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 3 cut(s) 80, 353, 463
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 2 cut(s) 428, 615
RsaNI GTAC 2 cut(s) 427, 614
SaqAI TTAA 2 cut(s) 293, 492
SatI GCNGC 4 cut(s) 147, 498, 529, 590
Sau3AI GATC 4 cut(s) 80, 117, 353, 463
SduI GDGCHC 1 cut(s) 279
SetI ASST 9 cut(s) 48, 128, 157, 276, 408, 502, 519, 530, 594
SfcI CTRYAG 2 cut(s) 63, 432
SmlI CTYRAG 2 cut(s) 150, 292
SmoI CTYRAG 2 cut(s) 150, 292
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 395
SspMI CTAG 2 cut(s) 38, 50
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 4 cut(s) 214, 229, 426, 440
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 253
TasI AATT 1 cut(s) 8
TfiI GAWTC 2 cut(s) 565, 601
Tru1I TTAA 2 cut(s) 293, 492
Tru9I TTAA 2 cut(s) 293, 492
TscAI CASTG 2 cut(s) 217, 366
TseFI GTSAC 3 cut(s) 26, 214, 319
TseI GCWGC 4 cut(s) 146, 497, 528, 589
Tsp45I GTSAC 3 cut(s) 26, 214, 319
TspDTI ATGAA 1 cut(s) 578
TspRI CASTG 2 cut(s) 217, 366
Tth111I GACNNNGTC 1 cut(s) 212
Vha464I CTTAAG 1 cut(s) 292
VspI ATTAAT 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XspI CTAG 2 cut(s) 38, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.