Rmu_sc0000536.1_g000002
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000536.1
OG0000416
Physical Location & Seq
Forward (+)
16331 .. 18899
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000536.1_g000002.1.cds

Sequence Viewer

Length: 465 bp
atgggcgtcagagggagaccgcgctgggccgtcttcaactctccgatgcctaattcccagtttcagaagcttctgatgccatcttggcgcagcgcgtcggcggcgatctggaggtggtccgacgccgaggttgtagccggtctggcgttggtagggacttatgggtatgctgccccagagtatgttgaaataggccatctttccatccatagtgacttatggagttttggtgtggtcctgtatgagatcctcactgggaggcgtgtgttagaaagacaccggccaacagtggagcagaagcttctttattgggttagacagtaccctgcagacaataaaaagttcagcatgataatagatccactcctgagagaccagtattgtattaatgtagctcggaaaatcgccaagttggcagatagctgcctgaacaagaattcgaaaggcaggccaacaatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.65

Weight (kDa)

9.84

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 22, 95
AciI CCGC 2 cut(s) 20, 101
AclWI GGATC 2 cut(s) 241, 353
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 1 cut(s) 436
AcyI GRCGYC 2 cut(s) 6, 123
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 2 cut(s) 37, 188
AluBI AGCT 4 cut(s) 70, 301, 395, 423
AluI AGCT 4 cut(s) 70, 301, 395, 423
Alw26I GTCTC 2 cut(s) 10, 366
AlwI GGATC 2 cut(s) 241, 353
AoxI GGCC 4 cut(s) 27, 193, 281, 449
ApeKI GCWGC 3 cut(s) 90, 170, 423
ApoI RAATTY 1 cut(s) 436
AseI ATTAAT 1 cut(s) 387
AspLEI GCGC 3 cut(s) 24, 90, 95
AspS9I GGNCC 3 cut(s) 27, 117, 235
AsuII TTCGAA 1 cut(s) 440
AvaII GGWCC 2 cut(s) 117, 235
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 102, 157, 410
BccI CCATC 3 cut(s) 88, 204, 212
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 10, 366
BfmI CTRYAG 1 cut(s) 327
BglI GCCNNNNNGGC 3 cut(s) 85, 143, 413
BisI GCNGC 4 cut(s) 91, 102, 171, 424
BlsI GCNGC 4 cut(s) 92, 103, 172, 425
Bme18I GGWCC 2 cut(s) 117, 235
BmgT120I GGNCC 3 cut(s) 27, 117, 235
BmrI ACTGGG 2 cut(s) 52, 264
BmsI GCATC 2 cut(s) 36, 66
BmuI ACTGGG 2 cut(s) 52, 264
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 440
BsaHI GRCGYC 2 cut(s) 6, 123
BsaI GGTCTC 2 cut(s) 10, 366
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bse118I RCCGGY 2 cut(s) 137, 279
Bse1I ACTGG 3 cut(s) 58, 259, 376
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 3 cut(s) 58, 259, 376
BseXI GCAGC 3 cut(s) 102, 157, 410
BseYI CCCAGC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 22, 95
BshFI GGCC 4 cut(s) 29, 195, 283, 451
BsiSI CCGG 2 cut(s) 138, 280
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 10, 366
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 4 cut(s) 29, 195, 283, 451
Bso31I GGTCTC 2 cut(s) 10, 366
Bsp119I TTCGAA 1 cut(s) 440
Bsp143I GATC 3 cut(s) 105, 246, 358
BspACI CCGC 2 cut(s) 20, 101
BspANI GGCC 4 cut(s) 29, 195, 283, 451
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 2 cut(s) 22, 95
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 2 cut(s) 241, 353
BspT104I TTCGAA 1 cut(s) 440
BspTNI GGTCTC 2 cut(s) 10, 366
BsrFI RCCGGY 2 cut(s) 137, 279
BsrI ACTGG 3 cut(s) 58, 259, 376
BssAI RCCGGY 2 cut(s) 137, 279
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 105, 246, 358
BssNI GRCGYC 2 cut(s) 6, 123
Bst4CI ACNGT 2 cut(s) 289, 321
BstACI GRCGYC 2 cut(s) 6, 123
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 2 cut(s) 22, 95
BstHHI GCGC 3 cut(s) 24, 90, 95
BstKTI GATC 3 cut(s) 108, 249, 361
BstMAI GTCTC 2 cut(s) 10, 366
BstMBI GATC 3 cut(s) 105, 246, 358
BstMWI GCNNNNNNNGC 5 cut(s) 76, 85, 101, 143, 413
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 2 cut(s) 22, 95
BstV1I GCAGC 3 cut(s) 102, 157, 410
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 246, 358
BstYI RGATCY 2 cut(s) 246, 358
BsuRI GGCC 4 cut(s) 29, 195, 283, 451
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 252, 294
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 3 cut(s) 24, 90, 95
Cfr10I RCCGGY 2 cut(s) 137, 279
Cfr13I GGNCC 3 cut(s) 27, 117, 235
CseI GACGC 2 cut(s) 84, 131
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 349
CviJI RGCY 9 cut(s) 29, 70, 137, 195, 283, 301, 395, 423, 451
CviKI_1 RGCY 9 cut(s) 29, 70, 137, 195, 283, 301, 395, 423, 451
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 368
DpnI GATC 3 cut(s) 107, 248, 360
DpnII GATC 3 cut(s) 105, 246, 358
EaeI YGGCCR 1 cut(s) 281
Eco31I GGTCTC 2 cut(s) 10, 366
Eco47I GGWCC 2 cut(s) 117, 235
EcoRI GAATTC 1 cut(s) 436
FaeI CATG 1 cut(s) 352
FaiI YATR 7 cut(s) 162, 168, 183, 210, 220, 243, 350
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 91, 102, 171, 424
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 4 cut(s) 91, 102, 171, 424
GlaI GCGC 3 cut(s) 23, 89, 94
GluI GCNGC 4 cut(s) 91, 102, 171, 424
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 4 cut(s) 29, 195, 283, 451
HapII CCGG 2 cut(s) 138, 280
HgaI GACGC 2 cut(s) 84, 131
HhaI GCGC 3 cut(s) 24, 90, 95
Hin1I GRCGYC 2 cut(s) 6, 123
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 3 cut(s) 22, 88, 93
HinP1I GCGC 3 cut(s) 22, 88, 93
HindIII AAGCTT 2 cut(s) 68, 299
HpaII CCGG 2 cut(s) 138, 280
Hpy188I TCNGA 6 cut(s) 11, 45, 66, 75, 121, 399
Hpy188III TCNNGA 2 cut(s) 109, 367
Hpy99I CGWCG 2 cut(s) 100, 125
HpyCH4III ACNGT 2 cut(s) 289, 321
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 85, 101, 143, 413
HpyF3I CTNAG 1 cut(s) 368
Hsp92I GRCGYC 2 cut(s) 6, 123
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 3 cut(s) 22, 88, 93
Kzo9I GATC 3 cut(s) 105, 246, 358
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 3 cut(s) 102, 157, 410
LweI GCATC 2 cut(s) 36, 66
MaeIII GTNAC 1 cut(s) 212
MalI GATC 3 cut(s) 107, 248, 360
MboI GATC 3 cut(s) 105, 246, 358
MboII GAAGA 1 cut(s) 25
MflI RGATCY 2 cut(s) 246, 358
MluCI AATT 3 cut(s) 52, 436, 460
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 5 cut(s) 5, 105, 121, 252, 260
MseI TTAA 1 cut(s) 387
MspI CCGG 2 cut(s) 138, 280
MteI GCGCNGCGC 1 cut(s) 91
MvnI CGCG 2 cut(s) 22, 95
MwoI GCNNNNNNNGC 5 cut(s) 76, 85, 101, 143, 413
NdeII GATC 3 cut(s) 105, 246, 358
NlaIII CATG 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 212
NspV TTCGAA 1 cut(s) 440
PkrI GCNGC 4 cut(s) 92, 103, 172, 425
PshBI ATTAAT 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 24
PspPI GGNCC 3 cut(s) 27, 117, 235
PstI CTGCAG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 246, 358
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 91, 102, 171, 424
Sau3AI GATC 3 cut(s) 105, 246, 358
Sau96I GGNCC 3 cut(s) 27, 117, 235
SetI ASST 6 cut(s) 72, 116, 132, 303, 397, 425
SfaNI GCATC 2 cut(s) 36, 66
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 2 cut(s) 117, 235
Sse9I AATT 3 cut(s) 52, 436, 460
SsiI CCGC 2 cut(s) 20, 101
TaaI ACNGT 2 cut(s) 289, 321
TaqI TCGA 1 cut(s) 440
TasI AATT 3 cut(s) 52, 436, 460
TauI GCSGC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 2 cut(s) 259, 294
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 90, 170, 423
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 2 cut(s) 259, 294
VpaK11BI GGWCC 2 cut(s) 117, 235
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.