RLG00000003346
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000416
Physical Location & Seq
Reverse (-)
47452709 .. 47457662
4954 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003346

Sequence Viewer

Length: 804 bp
ATGGTGGTTACTGATTGGGTGTGGTTTGTTGGGTTTGATGTGTGCTCCTTAACTCTGGTATTAGACCGTGCCTCGAAATCTCTACCTTCACTAAGAAGCATACCAGAATTGTACAAAGAGAAAGAGCAGAATTTGAAGGCTTTCTCATTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGTGAAGGAGGCTTTCGGATTGTGTATAAAGGAATAATCATGCCCAAAAATGGCCAGGACGGTCATAAAGCATGGCTTGCAGAGGTTCAATTTCTCAGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAGAGGGATTCAACGGCTATTGGTATATGAATATATGCCTAATAGAAGTTTAGAAGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGAACTGGAAGTCCAGGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTGTTACTTGGGCCTGTGGTTTTAAGAGGAGATACTGGAAATCCCAAAATCTGGATTGTATTCACCAGCTTGAGGAGGTATTAGTAGCACTCTCCACTGGTTATCCTACTAATGCCTTGGAGTTCGCAACATATATTCTTGAGCATGCTCCGAAATTGAAGAAAATGAAAAGAGGAGTGAATGACGATGGAGCAATGGGTGAAAGTTATTATGGGAAGCTCTTTCACTTGCACCGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

30.56

Weight (kDa)

8.57

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 67 - 169 3.6e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 81 - 169 6.7e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccB7I CCANNNNNTGG 2 cut(s) 557, 613
AclWI GGATC 1 cut(s) 455
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 2 cut(s) 113, 562
AfiI CCNNNNNNNGG 5 cut(s) 248, 316, 557, 613, 634
AgeI ACCGGT 1 cut(s) 795
AgsI TTSAA 7 cut(s) 136, 168, 287, 365, 421, 433, 721
AjnI CCWGG 3 cut(s) 252, 328, 516
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 5 cut(s) 157, 196, 325, 631, 781
AluI AGCT 5 cut(s) 157, 196, 325, 631, 781
Alw21I GWGCWC 2 cut(s) 47, 159
AlwI GGATC 1 cut(s) 455
AoxI GGCC 2 cut(s) 250, 573
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 130
AsiGI ACCGGT 1 cut(s) 795
Asp700I GAANNNNTTC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 4 cut(s) 212, 299, 617, 773
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 2 cut(s) 451, 500
Bbv12I GWGCWC 2 cut(s) 47, 159
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 551, 743
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 254, 330, 518
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 254, 330, 518
BmgT120I GGNCC 1 cut(s) 573
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 3 cut(s) 254, 330, 518
Bpu10I CCTNAGC 2 cut(s) 158, 527
BpuEI CTTGAG 3 cut(s) 465, 653, 722
BsaJI CCNNGG 2 cut(s) 443, 678
BsaWI WCCGGW 1 cut(s) 795
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 316, 557, 613, 634
Bse118I RCCGGY 1 cut(s) 795
Bse1I ACTGG 3 cut(s) 513, 602, 664
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 3 cut(s) 254, 330, 518
BseDI CCNNGG 2 cut(s) 443, 678
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 5 cut(s) 248, 316, 557, 613, 634
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 172, 307, 541
BseNI ACTGG 3 cut(s) 513, 602, 664
BseRI GAGGAG 3 cut(s) 604, 650, 750
BseXI GCAGC 1 cut(s) 463
BshFI GGCC 2 cut(s) 252, 575
BshTI ACCGGT 1 cut(s) 795
BsiHKAI GWGCWC 2 cut(s) 47, 159
BsiSI CCGG 1 cut(s) 796
BslI CCNNNNNNNGG 5 cut(s) 248, 316, 557, 613, 634
BsnI GGCC 2 cut(s) 252, 575
Bsp1286I GDGCHC 2 cut(s) 47, 159
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 2 cut(s) 409, 447
BspANI GGCC 2 cut(s) 252, 575
BspCNI CTCAG 3 cut(s) 171, 306, 540
BspLI GGNNCC 1 cut(s) 538
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 795
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 3 cut(s) 513, 602, 664
BssAI RCCGGY 1 cut(s) 795
BssECI CCNNGG 2 cut(s) 443, 678
BssMI GATC 2 cut(s) 409, 447
BssSI CACGAG 2 cut(s) 451, 500
BssT1I CCWWGG 2 cut(s) 443, 678
Bst2BI CACGAG 2 cut(s) 451, 500
Bst2UI CCWGG 3 cut(s) 254, 330, 518
Bst4CI ACNGT 3 cut(s) 68, 260, 565
Bst6I CTCTTC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 276, 546, 708
BstDEI CTNAG 4 cut(s) 92, 158, 293, 527
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 2 cut(s) 412, 450
BstMBI GATC 2 cut(s) 409, 447
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 3 cut(s) 254, 330, 518
BstNSI RCATGY 2 cut(s) 548, 710
BstSCI CCNGG 3 cut(s) 252, 328, 516
BstV1I GCAGC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 252, 575
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 2 cut(s) 301, 657
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 276, 546, 708
Cfr10I RCCGGY 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 573
Csp6I GTAC 2 cut(s) 112, 561
CspAI ACCGGT 1 cut(s) 795
CviAII CATG 5 cut(s) 238, 270, 541, 545, 707
CviQI GTAC 2 cut(s) 112, 561
DdeI CTNAG 4 cut(s) 92, 158, 293, 527
DpnI GATC 2 cut(s) 411, 449
DpnII GATC 2 cut(s) 409, 447
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 443, 678
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 252, 328, 516
EcoT14I CCWWGG 2 cut(s) 443, 678
EcoT22I ATGCAT 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 443, 678
FaeI CATG 5 cut(s) 241, 273, 544, 548, 710
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 399, 431
FatI CATG 5 cut(s) 237, 269, 540, 544, 706
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 2 cut(s) 252, 575
HapII CCGG 1 cut(s) 796
Hin1II CATG 5 cut(s) 241, 273, 544, 548, 710
HindIII AAGCTT 2 cut(s) 194, 323
HinfI GANTC 2 cut(s) 164, 361
HpaII CCGG 1 cut(s) 796
HphI GGTGA 4 cut(s) 212, 299, 617, 773
Hpy188I TCNGA 3 cut(s) 216, 714, 803
Hpy188III TCNNGA 3 cut(s) 451, 614, 701
HpyAV CCTTC 4 cut(s) 96, 130, 197, 527
HpyCH4III ACNGT 3 cut(s) 68, 260, 565
HpyCH4V TGCA 4 cut(s) 190, 278, 544, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 4 cut(s) 92, 158, 293, 527
Hsp92II CATG 5 cut(s) 241, 273, 544, 548, 710
Kzo9I GATC 2 cut(s) 409, 447
LmnI GCTCC 3 cut(s) 50, 715, 752
Lsp1109I GCAGC 1 cut(s) 463
MaeIII GTNAC 3 cut(s) 7, 456, 565
MalI GATC 2 cut(s) 411, 449
MboI GATC 2 cut(s) 409, 447
MboII GAAGA 3 cut(s) 419, 431, 733
MhlI GDGCHC 2 cut(s) 47, 159
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 4 cut(s) 107, 130, 287, 716
MluNI TGGCCA 1 cut(s) 252
Mox20I TGGCCA 1 cut(s) 252
Mph1103I ATGCAT 1 cut(s) 546
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 50, 585
Msp20I TGGCCA 1 cut(s) 252
MspI CCGG 1 cut(s) 796
MspR9I CCNGG 3 cut(s) 254, 330, 518
MvaI CCWGG 3 cut(s) 254, 330, 518
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 2 cut(s) 409, 447
NlaIII CATG 5 cut(s) 241, 273, 544, 548, 710
NlaIV GGNNCC 1 cut(s) 538
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 2 cut(s) 548, 710
PaeI GCATGC 2 cut(s) 548, 710
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 164, 361
PflMI CCANNNNNTGG 2 cut(s) 557, 613
PfoI TCCNGGA 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 795
PkrI GCNGC 1 cut(s) 478
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 3 cut(s) 252, 328, 516
PspGI CCWGG 3 cut(s) 252, 328, 516
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 573
RsaI GTAC 2 cut(s) 113, 562
RsaNI GTAC 2 cut(s) 112, 561
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 50, 585
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 2 cut(s) 409, 447
Sau96I GGNCC 1 cut(s) 573
ScrFI CCNGG 3 cut(s) 254, 330, 518
SduI GDGCHC 2 cut(s) 47, 159
SmlI CTYRAG 3 cut(s) 480, 632, 701
SmoI CTYRAG 3 cut(s) 480, 632, 701
SphI GCATGC 2 cut(s) 548, 710
Sse9I AATT 4 cut(s) 107, 130, 287, 716
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 252, 328, 516
StyI CCWWGG 2 cut(s) 443, 678
TaaI ACNGT 3 cut(s) 68, 260, 565
TaqI TCGA 1 cut(s) 74
TasI AATT 4 cut(s) 107, 130, 287, 716
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 2 cut(s) 164, 361
Tru1I TTAA 2 cut(s) 50, 585
Tru9I TTAA 2 cut(s) 50, 585
TscAI CASTG 2 cut(s) 301, 664
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 396, 743
TspRI CASTG 2 cut(s) 301, 664
Van91I CCANNNNNTGG 2 cut(s) 557, 613
XapI RAATTY 1 cut(s) 130
XceI RCATGY 2 cut(s) 548, 710
XmnI GAANNNNTTC 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.