RchiOBHm_Chr7g0205471
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
23185876 .. 23190789
4914 bp
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UTR
Exon/CDS
Intron
PRQ18386

Sequence Viewer

Length: 270 bp
ATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATGAGGAACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCTAACGTGCTCTTAGATGAGGACCTTAAGGCGAAGCTCTCAGACTTTGAGCTTGCTAGAGAAGTGTCAAAGGGTGACCGTACTCATGTATTGACAGCGGTAGTAGGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

89

Amino Acids

10.12

Weight (kDa)

5.5

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 80 1.2e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 22 - 89 8e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 68
AfaI GTAC 1 cut(s) 238
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 3 cut(s) 34, 46, 151
AjnI CCWGG 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 3 cut(s) 15, 193, 208
AluI AGCT 3 cut(s) 15, 193, 208
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 145, 242
AvaII GGWCC 1 cut(s) 178
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 22, 60
BspACI CCGC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 209
BspPI GGATC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 182
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 22, 60
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 16, 169, 196
BstEII GGTNACC 1 cut(s) 230
BstKTI GATC 2 cut(s) 25, 63
BstMBI GATC 2 cut(s) 22, 60
BstNI CCWGG 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 113, 242
CviJI RGCY 5 cut(s) 15, 41, 104, 193, 208
CviKI_1 RGCY 5 cut(s) 15, 41, 104, 193, 208
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 3 cut(s) 16, 169, 196
DpnI GATC 2 cut(s) 24, 62
DpnII GATC 2 cut(s) 22, 60
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 178
Eco91I GGTNACC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 116, 245
FaiI YATR 4 cut(s) 114, 139, 243, 268
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 2 cut(s) 112, 241
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 90
Hin1II CATG 2 cut(s) 116, 245
HindIII AAGCTT 1 cut(s) 13
HphI GGTGA 2 cut(s) 145, 242
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 64, 143
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 162
HpyF3I CTNAG 3 cut(s) 16, 169, 196
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 116, 245
Kzo9I GATC 2 cut(s) 22, 60
LpnPI CCDG 4 cut(s) 22, 107, 116, 143
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 69, 230
MalI GATC 2 cut(s) 24, 62
MboI GATC 2 cut(s) 22, 60
MboII GAAGA 2 cut(s) 32, 44
MhlI GDGCHC 1 cut(s) 168
MnlI CCTC 5 cut(s) 60, 60, 109, 166, 169
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NdeII GATC 2 cut(s) 22, 60
NlaIII CATG 2 cut(s) 116, 245
NmuCI GTSAC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 22, 60
Sau96I GGNCC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 168
SetI ASST 7 cut(s) 17, 71, 135, 165, 183, 195, 210
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 93, 182
SmoI CTYRAG 2 cut(s) 93, 182
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 142
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 230
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 178
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.