RLG00000028901
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000416
Physical Location & Seq
Forward (+)
30086829 .. 30088996
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028901

Sequence Viewer

Length: 1164 bp
ATGAAGTGTTTCTACTACTTTAAGGAAAAGTCTAAGAGCAGGGAACAAAGATCAGCTCCTGAGCTAAAAGACCAAAGCAGCTCTGATTATTCAGGAGCTGATAGGGTCATTAAGTCTTCTTGCTCAGCAAATTCACCGCGCGGTATACCAGAATTGTATGAAGAAAAGGCTCATAATCTAAGGGTGTTTACTTTCCAAGAGCTGAGGCAGGCAACAAATGATTTCAATAGGTTGCTTAAGATTGGAGAAGGTGGATTTGGAAATGTCTATAAGGGTTCAATTAAGCCTGCTGAGTCCAACGGCGATCCAGTTGTAGTGGCCATTAAAAAGCTCAACAACGACGGCTTACAGGGTCACAAACAATGGGTGGCAGAAGTTCAGTTTCTAAGTGTTGTGGAGCACCCGAATCTTGTCAAACTAATAGGATACTGTGCTGTGGATGGAGAAAGAGGAATTCAAAGACTACTTATCTATGAATATATGCCAAACAGAAGTTTAGAAGATCATCTATTTAACAGGACATACCCAACTATTCCTTGGGAGACAAGATTACAGATAATACTGGGAGCTGCTGAAGGATTAGCTTATCTTCATGAAGGACTGGAAGTTCAGGTAGTGGGAACATATGGATATGCTGCTCCAGATTACATTGAGACGGGCCATCTGACAACTAAGAGTGATGTCTGGAGCTTCGGTGTAGTGTTGTATGAAATTCTTACAGGCAGGCGATCATTAGAGAGAAACCGGCCAAGAACAGAACAGAAACTCTTAGATTGGGTGAAACAGTTTCCTCCTGAGAGCAAAAGGTTTGGCTTGATGATAGATCCTCGACTTGGAAGCAGTTATTTTAGCAGTGCAGCGAGAAAAATTGCCAAGTTGGCTGATAGTTGTCTGTCAAAGAGTGCAAAAGACCGGCCAACAATGAGTCAGGTAGTAGAGACATTGAAGCAGATTATCCAAGACTCAGAAGAAGGAAACCGATCCGAGAGAAAAAGTCCTGAATCTTTAGAAAGTGACCAAGTTGACTCTGGGACAAAGGAGAAGCAATTAGGGGCCTCAGAGTCGTGGAAAAGACGAATGACTCACCTGGCGAAACTAGGAGAGCATGTGGAGGGTGCTAGTAGAAGAAGATTCATGATTATGCAGAGGGCAAAGGTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

388

Amino Acids

43.91

Weight (kDa)

9.09

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 76 - 199 6.8e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 80 - 199 6.2e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 204 - 313 5.3e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 211 - 315 5.8e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 139, 141
AciI CCGC 2 cut(s) 137, 141
AclWI GGATC 3 cut(s) 299, 818, 975
AcoI YGGCCR 3 cut(s) 318, 746, 914
AcsI RAATTY 3 cut(s) 130, 453, 711
AcuI CTGAAG 1 cut(s) 594
AfiI CCNNNNNNNGG 1 cut(s) 833
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 4 cut(s) 226, 279, 458, 946
AjnI CCWGG 1 cut(s) 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AloI GAACNNNNNNTCC 2 cut(s) 591, 623
AluBI AGCT 9 cut(s) 56, 64, 81, 98, 202, 331, 569, 584, 690
AluI AGCT 9 cut(s) 56, 64, 81, 98, 202, 331, 569, 584, 690
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 3 cut(s) 536, 647, 932
AlwI GGATC 3 cut(s) 299, 818, 975
AlwNI CAGNNNCTG 2 cut(s) 59, 98
AoxI GGCC 5 cut(s) 318, 658, 746, 914, 1053
ApeKI GCWGC 4 cut(s) 78, 569, 635, 857
ApoI RAATTY 3 cut(s) 130, 453, 711
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 658, 1053
AsuHPI GGTGA 3 cut(s) 126, 790, 1076
BalI TGGCCA 1 cut(s) 320
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 4 cut(s) 90, 556, 622, 869
BccI CCATC 2 cut(s) 434, 669
BceAI ACGGC 2 cut(s) 316, 358
BciT130I CCWGG 1 cut(s) 1088
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 3 cut(s) 536, 647, 932
BfaI CTAG 2 cut(s) 1097, 1119
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 878
BisI GCNGC 4 cut(s) 79, 570, 636, 858
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 4 cut(s) 80, 571, 637, 859
Bme1390I CCNGG 1 cut(s) 1088
BmgT120I GGNCC 2 cut(s) 658, 1053
BmiI GGNNCC 1 cut(s) 1054
BmrFI CCNGG 1 cut(s) 1088
BmrI ACTGGG 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 2 cut(s) 624, 706
Bpu10I CCTNAGC 2 cut(s) 60, 203
Bpu1102I GCTNAGC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 536
BsaXI ACNNNNNCTCC 4 cut(s) 679, 709, 1092, 1122
Bsc4I CCNNNNNNNGG 1 cut(s) 833
Bse118I RCCGGY 2 cut(s) 744, 912
Bse1I ACTGG 3 cut(s) 308, 567, 606
BseBI CCWGG 1 cut(s) 1088
BseDI CCNNGG 1 cut(s) 536
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 833
BseMII CTCAG 7 cut(s) 51, 138, 194, 282, 786, 978, 1071
BseNI ACTGG 3 cut(s) 308, 567, 606
BseXI GCAGC 4 cut(s) 90, 556, 622, 869
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 2 cut(s) 139, 141
BshFI GGCC 5 cut(s) 320, 660, 748, 916, 1055
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 745, 913
BslFI GGGAC 1 cut(s) 1045
BslI CCNNNNNNNGG 1 cut(s) 833
BsmAI GTCTC 3 cut(s) 536, 647, 932
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 1045
BsnI GGCC 5 cut(s) 320, 660, 748, 916, 1055
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 6 cut(s) 50, 304, 502, 728, 823, 980
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 137, 141
BspANI GGCC 5 cut(s) 320, 660, 748, 916, 1055
BspCNI CTCAG 7 cut(s) 52, 137, 195, 283, 787, 977, 1070
BspFNI CGCG 2 cut(s) 139, 141
BspHI TCATGA 2 cut(s) 592, 1134
BspLI GGNNCC 1 cut(s) 1054
BspPI GGATC 3 cut(s) 299, 818, 975
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 744, 912
BsrI ACTGG 3 cut(s) 308, 567, 606
BssAI RCCGGY 2 cut(s) 744, 912
BssECI CCNNGG 1 cut(s) 536
BssMI GATC 6 cut(s) 50, 304, 502, 728, 823, 980
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 536
Bst1107I GTATAC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 1088
Bst4CI ACNGT 2 cut(s) 431, 786
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 210, 288, 725
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 2 cut(s) 139, 141
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 6 cut(s) 53, 307, 505, 731, 826, 983
BstMAI GTCTC 3 cut(s) 536, 647, 932
BstMBI GATC 6 cut(s) 50, 304, 502, 728, 823, 980
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstNI CCWGG 1 cut(s) 1088
BstNSI RCATGY 1 cut(s) 1109
BstSCI CCNGG 1 cut(s) 1086
BstUI CGCG 2 cut(s) 139, 141
BstV1I GCAGC 4 cut(s) 90, 556, 622, 869
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZ17I GTATAC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 5 cut(s) 320, 660, 748, 916, 1055
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 859
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 3 cut(s) 210, 288, 725
CaiI CAGNNNCTG 2 cut(s) 59, 98
CciI TCATGA 2 cut(s) 592, 1134
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 2 cut(s) 744, 912
Cfr13I GGNCC 2 cut(s) 658, 1053
CviAII CATG 3 cut(s) 593, 1106, 1135
DpnI GATC 6 cut(s) 52, 306, 504, 730, 825, 982
DpnII GATC 6 cut(s) 50, 304, 502, 728, 823, 980
EaeI YGGCCR 3 cut(s) 318, 746, 914
Eco130I CCWWGG 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 1053
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 1086
EcoT14I CCWWGG 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 3 cut(s) 596, 1109, 1138
FaqI GGGAC 1 cut(s) 1045
FatI CATG 3 cut(s) 592, 1105, 1134
FauNDI CATATG 1 cut(s) 625
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 79, 570, 636, 858
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 4 cut(s) 79, 570, 636, 858
FspBI CTAG 2 cut(s) 1097, 1119
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 79, 570, 636, 858
GsuI CTGGAG 2 cut(s) 624, 706
HaeIII GGCC 5 cut(s) 320, 660, 748, 916, 1055
HapII CCGG 2 cut(s) 745, 913
HhaI GCGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 596, 1109, 1138
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HinfI GANTC 9 cut(s) 293, 406, 925, 962, 1001, 1025, 1061, 1081, 1131
HpaII CCGG 2 cut(s) 745, 913
HphI GGTGA 3 cut(s) 126, 790, 1076
Hpy166II GTNNAC 3 cut(s) 146, 189, 1024
Hpy188I TCNGA 5 cut(s) 85, 666, 967, 985, 1060
Hpy188III TCNNGA 8 cut(s) 59, 93, 593, 641, 685, 794, 998, 1135
Hpy8I GTNNAC 3 cut(s) 146, 189, 1024
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 4 cut(s) 242, 569, 590, 965
HpyCH4III ACNGT 2 cut(s) 431, 786
HpyCH4V TGCA 3 cut(s) 857, 905, 1144
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
Hsp92II CATG 3 cut(s) 596, 1109, 1138
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 6 cut(s) 50, 304, 502, 728, 823, 980
LmnI GCTCC 6 cut(s) 61, 95, 397, 566, 643, 687
Lsp1109I GCAGC 4 cut(s) 90, 556, 622, 869
MaeI CTAG 2 cut(s) 1097, 1119
MaeIII GTNAC 3 cut(s) 353, 1013, 1156
MalI GATC 6 cut(s) 52, 306, 504, 730, 825, 982
MboI GATC 6 cut(s) 50, 304, 502, 728, 823, 980
MboII GAAGA 7 cut(s) 108, 173, 512, 581, 980, 1137, 1140
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 7 cut(s) 130, 152, 279, 453, 711, 867, 1046
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 6 cut(s) 302, 934, 956, 1019, 1070, 1075
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 198, 443, 801, 837, 1066, 1105, 1140
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 320
MseI TTAA 6 cut(s) 21, 111, 237, 282, 324, 513
MslI CAYNNNNRTG 1 cut(s) 1139
Msp20I TGGCCA 1 cut(s) 320
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 2 cut(s) 745, 913
MspR9I CCNGG 1 cut(s) 1088
MvaI CCWGG 1 cut(s) 1088
MvnI CGCG 2 cut(s) 139, 141
MwoI GCNNNNNNNGC 1 cut(s) 878
NdeI CATATG 1 cut(s) 625
NdeII GATC 6 cut(s) 50, 304, 502, 728, 823, 980
NlaIII CATG 3 cut(s) 596, 1109, 1138
NlaIV GGNNCC 1 cut(s) 1054
NmuCI GTSAC 3 cut(s) 353, 1013, 1156
NspI RCATGY 1 cut(s) 1109
PagI TCATGA 2 cut(s) 592, 1134
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 406, 1001, 1131
PkrI GCNGC 4 cut(s) 80, 571, 637, 859
PleI GAGTC 6 cut(s) 301, 933, 956, 1019, 1069, 1075
PpsI GAGTC 6 cut(s) 301, 933, 956, 1019, 1069, 1075
Psp6I CCWGG 1 cut(s) 1086
PspGI CCWGG 1 cut(s) 1086
PspN4I GGNNCC 1 cut(s) 1054
PspPI GGNCC 2 cut(s) 658, 1053
PstNI CAGNNNCTG 2 cut(s) 59, 98
PsuI RGATCY 1 cut(s) 823
RseI CAYNNNNRTG 1 cut(s) 1139
SaqAI TTAA 6 cut(s) 21, 111, 237, 282, 324, 513
SatI GCNGC 4 cut(s) 79, 570, 636, 858
Sau3AI GATC 6 cut(s) 50, 304, 502, 728, 823, 980
Sau96I GGNCC 2 cut(s) 658, 1053
SchI GAGTC 6 cut(s) 302, 934, 956, 1019, 1070, 1075
ScrFI CCNGG 1 cut(s) 1088
SduI GDGCHC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 7 cut(s) 130, 152, 279, 453, 711, 867, 1046
SsiI CCGC 2 cut(s) 137, 141
SspMI CTAG 2 cut(s) 1097, 1119
StyD4I CCNGG 1 cut(s) 1086
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 2 cut(s) 431, 786
TaqI TCGA 1 cut(s) 829
TasI AATT 7 cut(s) 130, 152, 279, 453, 711, 867, 1046
TfiI GAWTC 3 cut(s) 406, 1001, 1131
Tru1I TTAA 6 cut(s) 21, 111, 237, 282, 324, 513
Tru9I TTAA 6 cut(s) 21, 111, 237, 282, 324, 513
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 3 cut(s) 353, 1013, 1156
TseI GCWGC 4 cut(s) 78, 569, 635, 857
Tsp45I GTSAC 3 cut(s) 353, 1013, 1156
TspDTI ATGAA 7 cut(s) 17, 174, 489, 581, 609, 723, 1123
TspRI CASTG 1 cut(s) 859
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 3 cut(s) 130, 453, 711
XceI RCATGY 1 cut(s) 1109
XcmI CCANNNNNNNNNTGG 2 cut(s) 534, 1025
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 1097, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.