Rw7G019850
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000416
Physical Location & Seq
Forward (+)
22094602 .. 22096333
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019850.1

Sequence Viewer

Length: 684 bp
ATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACGAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGTAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCAGTATTCTATTAATGCAGCTCGAAAAATTGTCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATAAGGTGGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAACAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

227

Amino Acids

25.69

Weight (kDa)

9.77

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 194 1e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 24 - 192 4.3e-30 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 611
AciI CCGC 1 cut(s) 392
AclWI GGATC 4 cut(s) 30, 68, 343, 455
AcoI YGGCCR 2 cut(s) 383, 551
AfaI GTAC 3 cut(s) 232, 425, 613
AfiI CCNNNNNNNGG 1 cut(s) 678
AgsI TTSAA 4 cut(s) 34, 46, 151, 583
AhdI GACNNNNNGTC 1 cut(s) 125
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 6 cut(s) 15, 187, 403, 497, 525, 590
AluI AGCT 6 cut(s) 15, 187, 403, 497, 525, 590
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 4 cut(s) 30, 68, 343, 455
AoxI GGCC 4 cut(s) 215, 295, 383, 551
ApeKI GCWGC 4 cut(s) 89, 272, 494, 525
AseI ATTAAT 1 cut(s) 489
Asp718I GGTACC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 145, 236
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanI GGYRCC 1 cut(s) 611
BauI CACGAG 2 cut(s) 64, 113
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 76, 259, 506, 512
BccI CCATC 2 cut(s) 306, 314
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 576
BisI GCNGC 4 cut(s) 90, 273, 495, 526
BlsI GCNGC 4 cut(s) 91, 274, 496, 527
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 650
BmuI ACTGGG 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 678
Bse118I RCCGGY 2 cut(s) 381, 549
Bse1I ACTGG 3 cut(s) 126, 361, 478
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 126, 361, 478
BseXI GCAGC 4 cut(s) 76, 259, 506, 512
BshFI GGCC 4 cut(s) 217, 297, 385, 553
BshNI GGYRCC 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 2 cut(s) 382, 550
BslFI GGGAC 2 cut(s) 132, 271
BslI CCNNNNNNNGG 1 cut(s) 678
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 2 cut(s) 132, 271
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 4 cut(s) 217, 297, 385, 553
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 5 cut(s) 22, 60, 348, 460, 576
BspACI CCGC 1 cut(s) 392
BspANI GGCC 4 cut(s) 217, 297, 385, 553
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 613
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 4 cut(s) 30, 68, 343, 455
BspT107I GGYRCC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 468
BsrFI RCCGGY 2 cut(s) 381, 549
BsrI ACTGG 3 cut(s) 126, 361, 478
BssAI RCCGGY 2 cut(s) 381, 549
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 5 cut(s) 22, 60, 348, 460, 576
BssSI CACGAG 2 cut(s) 64, 113
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 2 cut(s) 64, 113
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 4 cut(s) 230, 247, 423, 437
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 204, 588
BstDEI CTNAG 4 cut(s) 16, 190, 370, 470
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 5 cut(s) 25, 63, 351, 463, 579
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 5 cut(s) 22, 60, 348, 460, 576
BstNI CCWGG 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 4 cut(s) 76, 259, 506, 512
BstX2I RGATCY 3 cut(s) 348, 460, 576
BstYI RGATCY 3 cut(s) 348, 460, 576
BsuRI GGCC 4 cut(s) 217, 297, 385, 553
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 204, 588
Cfr10I RCCGGY 2 cut(s) 381, 549
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 231, 424, 612
CviAII CATG 2 cut(s) 236, 451
CviQI GTAC 3 cut(s) 231, 424, 612
DdeI CTNAG 4 cut(s) 16, 190, 370, 470
DpnI GATC 5 cut(s) 24, 62, 350, 462, 578
DpnII GATC 5 cut(s) 22, 60, 348, 460, 576
DriI GACNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 2 cut(s) 383, 551
Eam1104I CTCTTC 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 239, 454
FaqI GGGAC 2 cut(s) 132, 271
FatI CATG 2 cut(s) 235, 450
Fnu4HI GCNGC 4 cut(s) 90, 273, 495, 526
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 4 cut(s) 90, 273, 495, 526
FspBI CTAG 1 cut(s) 207
GluI GCNGC 4 cut(s) 90, 273, 495, 526
HaeIII GGCC 4 cut(s) 217, 297, 385, 553
HapII CCGG 2 cut(s) 382, 550
Hin1II CATG 2 cut(s) 239, 454
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 1 cut(s) 599
HpaII CCGG 2 cut(s) 382, 550
HphI GGTGA 2 cut(s) 145, 236
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 64, 143, 580
Hpy8I GTNNAC 1 cut(s) 625
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 4 cut(s) 230, 247, 423, 437
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 431, 494, 542
HpyF3I CTNAG 4 cut(s) 16, 190, 370, 470
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 239, 454
KpnI GGTACC 1 cut(s) 615
Kzo9I GATC 5 cut(s) 22, 60, 348, 460, 576
LmnI GCTCC 2 cut(s) 12, 394
Lsp1109I GCAGC 4 cut(s) 76, 259, 506, 512
LweI GCATC 1 cut(s) 650
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 69, 224, 314
MalI GATC 5 cut(s) 24, 62, 350, 462, 578
MboI GATC 5 cut(s) 22, 60, 348, 460, 576
MboII GAAGA 1 cut(s) 44
MflI RGATCY 3 cut(s) 348, 460, 576
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 3 cut(s) 504, 631, 653
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 8 cut(s) 13, 60, 60, 109, 166, 354, 362, 672
MseI TTAA 2 cut(s) 177, 489
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 2 cut(s) 382, 550
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 131
NdeII GATC 5 cut(s) 22, 60, 348, 460, 576
NlaIII CATG 2 cut(s) 239, 454
NlaIV GGNNCC 1 cut(s) 613
NmuCI GTSAC 2 cut(s) 224, 314
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 4 cut(s) 91, 274, 496, 527
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 3 cut(s) 348, 460, 576
RsaI GTAC 3 cut(s) 232, 425, 613
RsaNI GTAC 3 cut(s) 231, 424, 612
SaqAI TTAA 2 cut(s) 177, 489
SatI GCNGC 4 cut(s) 90, 273, 495, 526
Sau3AI GATC 5 cut(s) 22, 60, 348, 460, 576
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 650
SfcI CTRYAG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 3 cut(s) 504, 631, 653
SsiI CCGC 1 cut(s) 392
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 4 cut(s) 230, 247, 423, 437
TaiI ACGT 1 cut(s) 165
TaqI TCGA 4 cut(s) 142, 242, 288, 499
TasI AATT 3 cut(s) 504, 631, 653
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 2 cut(s) 177, 489
Tru9I TTAA 2 cut(s) 177, 489
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 224, 314
TseI GCWGC 4 cut(s) 89, 272, 494, 525
Tsp45I GTSAC 2 cut(s) 224, 314
TspDTI ATGAA 1 cut(s) 575
TspRI CASTG 1 cut(s) 361
VspI ATTAAT 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.