RLG00000003296
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000416
Physical Location & Seq
Reverse (-)
46817310 .. 46818884
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003296

Sequence Viewer

Length: 363 bp
ATGCCCAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGGTGCTCAAGCTAGGATTGGCTTATCTACACGAGGAACTGGAAGTCCAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTATGGTGCTGTACGAGATCCTCACTGGGAGGCGTGTCTTAGAAAAACACCGGCCAACAGCAGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCGCTCCTGAGAGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

9.39

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 44 - 92 4.7e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 45 - 88 7.5e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 1 cut(s) 344
AclWI GGATC 3 cut(s) 68, 223, 335
AcoI YGGCCR 1 cut(s) 263
AfaI GTAC 2 cut(s) 224, 305
AgsI TTSAA 2 cut(s) 34, 46
AjnI CCWGG 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 115, 147
AluBI AGCT 3 cut(s) 15, 98, 283
AluI AGCT 3 cut(s) 15, 98, 283
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 3 cut(s) 68, 223, 335
AoxI GGCC 2 cut(s) 175, 263
ApeKI GCWGC 1 cut(s) 152
BauI CACGAG 2 cut(s) 64, 117
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 186, 194
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 56, 134
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 3 cut(s) 130, 241, 358
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 56, 134
BseGI GGATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 130, 241, 358
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 2 cut(s) 177, 265
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 2 cut(s) 177, 265
Bso31I GGTCTC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 4 cut(s) 22, 60, 228, 340
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 177, 265
BspCNI CTCAG 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 3 cut(s) 68, 223, 335
BspTNI GGTCTC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 3 cut(s) 130, 241, 358
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 56, 134
BssMI GATC 4 cut(s) 22, 60, 228, 340
BssSI CACGAG 2 cut(s) 64, 117
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 2 cut(s) 64, 117
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 303, 317
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 16, 250, 350
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 4 cut(s) 25, 63, 231, 343
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 4 cut(s) 22, 60, 228, 340
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 228, 340
BstYI RGATCY 2 cut(s) 228, 340
BsuRI GGCC 2 cut(s) 177, 265
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 261
Csp6I GTAC 2 cut(s) 223, 304
CviAII CATG 1 cut(s) 331
CviJI RGCY 6 cut(s) 15, 98, 108, 177, 265, 283
CviKI_1 RGCY 6 cut(s) 15, 98, 108, 177, 265, 283
CviQI GTAC 2 cut(s) 223, 304
DdeI CTNAG 3 cut(s) 16, 250, 350
DpnI GATC 4 cut(s) 24, 62, 230, 342
DpnII GATC 4 cut(s) 22, 60, 228, 340
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 334
FaiI YATR 7 cut(s) 144, 150, 165, 192, 202, 215, 332
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 2 cut(s) 177, 265
HapII CCGG 1 cut(s) 262
Hin1II CATG 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 281
HpaII CCGG 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 64, 349
HpyCH4III ACNGT 2 cut(s) 303, 317
HpyCH4V TGCA 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 16, 250, 350
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 4 cut(s) 22, 60, 228, 340
LmnI GCTCC 2 cut(s) 12, 351
LpnPI CCDG 9 cut(s) 22, 111, 120, 147, 159, 171, 222, 275, 321
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 69, 194
MalI GATC 4 cut(s) 24, 62, 230, 342
MbiI CCGCTC 1 cut(s) 346
MboI GATC 4 cut(s) 22, 60, 228, 340
MboII GAAGA 2 cut(s) 32, 44
MflI RGATCY 2 cut(s) 228, 340
MhlI GDGCHC 1 cut(s) 94
MnlI CCTC 5 cut(s) 60, 60, 113, 234, 242
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeII GATC 4 cut(s) 22, 60, 228, 340
NlaIII CATG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 228, 340
RsaI GTAC 2 cut(s) 224, 305
RsaNI GTAC 2 cut(s) 223, 304
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 22, 60, 228, 340
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 17, 71, 100, 285
SfcI CTRYAG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SsiI CCGC 1 cut(s) 344
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 303, 317
TaqI TCGA 1 cut(s) 168
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 194
TspRI CASTG 1 cut(s) 241
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.