RchiOBHm_Chr7g0206831
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24379709 .. 24381224
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18512

Sequence Viewer

Length: 420 bp
ATGGAGAAAGAGGGATCCAATTACCGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATTATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGTGCTGCTCAAGGATTGGCTTATTTACACGAGGACTGGAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTCCATCCATAGTGACTTGTGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.82

Weight (kDa)

6.72

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 129 2.9e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 117 5.9e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 9, 22, 113, 390
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 24, 31
AgsI TTSAA 4 cut(s) 79, 91, 193, 338
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 60, 235
AluI AGCT 2 cut(s) 60, 235
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 4 cut(s) 9, 22, 113, 390
AoxI GGCC 2 cut(s) 263, 343
ApeKI GCWGC 2 cut(s) 133, 320
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 187, 284
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BamHI GGATCC 1 cut(s) 14
BauI CACGAG 2 cut(s) 109, 157
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 120, 307
BccI CCATC 2 cut(s) 354, 361
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 255
BisI GCNGC 2 cut(s) 134, 321
BlsI GCNGC 2 cut(s) 135, 322
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 413
BmuI ACTGGG 1 cut(s) 413
BoxI GACNNNNGTC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 31
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 169, 408
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 2 cut(s) 220, 353
BseLI CCNNNNNNNGG 2 cut(s) 24, 31
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 169, 408
BseXI GCAGC 2 cut(s) 120, 307
BshFI GGCC 2 cut(s) 265, 345
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 24, 31
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 2 cut(s) 265, 345
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 14, 105, 395
BspANI GGCC 2 cut(s) 265, 345
BspCNI CTCAG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 4 cut(s) 9, 22, 113, 390
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 2 cut(s) 169, 408
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 3 cut(s) 14, 105, 395
BssSI CACGAG 2 cut(s) 109, 157
BssT1I CCWWGG 1 cut(s) 101
Bst2BI CACGAG 2 cut(s) 109, 157
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 61, 238, 417
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 220, 353
BstKTI GATC 3 cut(s) 17, 108, 398
BstMBI GATC 3 cut(s) 14, 105, 395
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 173
BstPAI GACNNNNGTC 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 120, 307
BstX2I RGATCY 2 cut(s) 14, 395
BstYI RGATCY 2 cut(s) 14, 395
BsuRI GGCC 2 cut(s) 265, 345
BtsCI GGATG 2 cut(s) 220, 353
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 303, 401
Cac8I GCNNGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 279
CviAII CATG 1 cut(s) 284
CviJI RGCY 9 cut(s) 28, 60, 86, 148, 229, 235, 250, 265, 345
CviKI_1 RGCY 9 cut(s) 28, 60, 86, 148, 229, 235, 250, 265, 345
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 3 cut(s) 61, 238, 417
DpnI GATC 3 cut(s) 16, 107, 397
DpnII GATC 3 cut(s) 14, 105, 395
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 101
Eco91I GGTNACC 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 1 cut(s) 287
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 134, 321
FokI GGATG 2 cut(s) 227, 340
Fsp4HI GCNGC 2 cut(s) 134, 321
FspBI CTAG 1 cut(s) 255
GluI GCNGC 2 cut(s) 134, 321
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 265, 345
HapII CCGG 1 cut(s) 25
Hin1II CATG 1 cut(s) 287
HinfI GANTC 1 cut(s) 168
HpaII CCGG 1 cut(s) 25
HphI GGTGA 2 cut(s) 187, 284
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 109, 185
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 3 cut(s) 61, 238, 417
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 287
Kzo9I GATC 3 cut(s) 14, 105, 395
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 38, 67, 150, 158, 185, 327, 339, 389
Lsp1109I GCAGC 2 cut(s) 120, 307
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 114, 272, 361
MalI GATC 3 cut(s) 16, 107, 397
MboI GATC 3 cut(s) 14, 105, 395
MboII GAAGA 2 cut(s) 89, 341
MflI RGATCY 2 cut(s) 14, 395
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 9 cut(s) 4, 58, 105, 105, 153, 208, 211, 401, 409
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 3 cut(s) 14, 105, 395
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 2 cut(s) 272, 361
PkrI GCNGC 2 cut(s) 135, 322
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 2 cut(s) 14, 395
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 134, 321
Sau3AI GATC 3 cut(s) 14, 105, 395
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 210
SetI ASST 5 cut(s) 62, 116, 177, 207, 237
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 184, 290
TasI AATT 1 cut(s) 19
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 303, 408
TseFI GTSAC 2 cut(s) 272, 361
TseI GCWGC 2 cut(s) 133, 320
Tsp45I GTSAC 2 cut(s) 272, 361
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 2 cut(s) 303, 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.