Rmu_sc0000536.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000536.1
OG0000416
Physical Location & Seq
Forward (+)
5944 .. 8327
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000536.1_g000001.1.cds

Sequence Viewer

Length: 423 bp
atgcttcagttcccagtttcagaagcttctgatgccatcttggcgcggcgcgtggcggcggcgatctggaggtggtccgacgccgaggttgtagcccgtctggtgttggtagggacttatgggtatgctgccccagagtatgttgaaataggccatctttccatccatagtgacttatggagttttggtgtggtcctgtatgagatcctcactgggaggcgtgtgttagaaagacaccggccaacagtggagcagaagcttctttattgggttagacagtaccctgcagacaataaaaagttcagcatgataatagatccactcctgagagaccagtattgtattaatgtagctcggaaaatcgccaagttggcagatagctgcctgaacaagaattcgaaaggcaggccaacaatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

16.03

Weight (kDa)

9.36

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 46, 51
AciI CCGC 3 cut(s) 46, 56, 59
AclWI GGATC 2 cut(s) 199, 311
AcoI YGGCCR 1 cut(s) 239
AcsI RAATTY 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 4 cut(s) 26, 259, 353, 381
AluI AGCT 4 cut(s) 26, 259, 353, 381
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 199, 311
AoxI GGCC 3 cut(s) 151, 239, 407
ApeKI GCWGC 2 cut(s) 128, 381
ApoI RAATTY 1 cut(s) 394
AseI ATTAAT 1 cut(s) 345
AspLEI GCGC 2 cut(s) 46, 51
AspS9I GGNCC 2 cut(s) 75, 193
AsuII TTCGAA 1 cut(s) 398
AvaII GGWCC 2 cut(s) 75, 193
BbvI GCAGC 2 cut(s) 115, 368
BccI CCATC 3 cut(s) 44, 162, 170
BcoDI GTCTC 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 285
BglI GCCNNNNNGGC 2 cut(s) 41, 371
BisI GCNGC 5 cut(s) 47, 57, 60, 129, 382
BlsI GCNGC 5 cut(s) 48, 58, 61, 130, 383
Bme18I GGWCC 2 cut(s) 75, 193
BmgT120I GGNCC 2 cut(s) 75, 193
BmrI ACTGGG 2 cut(s) 8, 222
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 2 cut(s) 8, 222
BpmI CTGGAG 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 3 cut(s) 14, 217, 334
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 3 cut(s) 14, 217, 334
BseXI GCAGC 2 cut(s) 115, 368
Bsh1236I CGCG 2 cut(s) 46, 51
BshFI GGCC 3 cut(s) 153, 241, 409
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 153, 241, 409
Bso31I GGTCTC 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 398
Bsp143I GATC 3 cut(s) 63, 204, 316
BspACI CCGC 3 cut(s) 46, 56, 59
BspANI GGCC 3 cut(s) 153, 241, 409
BspCNI CTCAG 1 cut(s) 318
BspFNI CGCG 2 cut(s) 46, 51
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 2 cut(s) 199, 311
BspT104I TTCGAA 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 3 cut(s) 14, 217, 334
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 3 cut(s) 63, 204, 316
BssNI GRCGYC 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 247, 279
BstACI GRCGYC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 2 cut(s) 46, 51
BstHHI GCGC 2 cut(s) 46, 51
BstKTI GATC 3 cut(s) 66, 207, 319
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 3 cut(s) 63, 204, 316
BstMWI GCNNNNNNNGC 3 cut(s) 32, 41, 371
BstSFI CTRYAG 1 cut(s) 285
BstUI CGCG 2 cut(s) 46, 51
BstV1I GCAGC 2 cut(s) 115, 368
BstX2I RGATCY 2 cut(s) 204, 316
BstYI RGATCY 2 cut(s) 204, 316
BsuRI GGCC 3 cut(s) 153, 241, 409
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 210, 252
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 2 cut(s) 46, 51
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 75, 193
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 280
CviAII CATG 1 cut(s) 307
CviJI RGCY 8 cut(s) 26, 95, 153, 241, 259, 353, 381, 409
CviKI_1 RGCY 8 cut(s) 26, 95, 153, 241, 259, 353, 381, 409
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 326
DpnI GATC 3 cut(s) 65, 206, 318
DpnII GATC 3 cut(s) 63, 204, 316
EaeI YGGCCR 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 75, 193
EcoRI GAATTC 1 cut(s) 394
FaeI CATG 1 cut(s) 310
FaiI YATR 7 cut(s) 120, 126, 141, 168, 178, 201, 308
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 47, 57, 60, 129, 382
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 5 cut(s) 47, 57, 60, 129, 382
GlaI GCGC 2 cut(s) 45, 50
GluI GCNGC 5 cut(s) 47, 57, 60, 129, 382
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 3 cut(s) 153, 241, 409
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 46, 51
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 2 cut(s) 44, 49
HinP1I GCGC 2 cut(s) 44, 49
HindIII AAGCTT 2 cut(s) 24, 257
HpaII CCGG 1 cut(s) 238
Hpy188I TCNGA 4 cut(s) 22, 31, 79, 357
Hpy188III TCNNGA 2 cut(s) 67, 325
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 247, 279
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 41, 371
HpyF3I CTNAG 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 2 cut(s) 44, 49
Kzo9I GATC 3 cut(s) 63, 204, 316
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 2 cut(s) 115, 368
LweI GCATC 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 65, 206, 318
MboI GATC 3 cut(s) 63, 204, 316
MflI RGATCY 2 cut(s) 204, 316
MluCI AATT 2 cut(s) 394, 418
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 4 cut(s) 63, 79, 210, 218
MseI TTAA 1 cut(s) 345
MspI CCGG 1 cut(s) 238
MteI GCGCNGCGC 1 cut(s) 47
MvnI CGCG 2 cut(s) 46, 51
MwoI GCNNNNNNNGC 3 cut(s) 32, 41, 371
NdeII GATC 3 cut(s) 63, 204, 316
NlaIII CATG 1 cut(s) 310
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 398
PkrI GCNGC 5 cut(s) 48, 58, 61, 130, 383
PshBI ATTAAT 1 cut(s) 345
PspPI GGNCC 2 cut(s) 75, 193
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 204, 316
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 5 cut(s) 47, 57, 60, 129, 382
Sau3AI GATC 3 cut(s) 63, 204, 316
Sau96I GGNCC 2 cut(s) 75, 193
SetI ASST 6 cut(s) 28, 74, 90, 261, 355, 383
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 2 cut(s) 75, 193
Sse9I AATT 2 cut(s) 394, 418
SsiI CCGC 3 cut(s) 46, 56, 59
TaaI ACNGT 2 cut(s) 247, 279
TaqI TCGA 1 cut(s) 398
TasI AATT 2 cut(s) 394, 418
TauI GCSGC 3 cut(s) 49, 59, 62
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 217, 252
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 128, 381
Tsp45I GTSAC 1 cut(s) 170
TspRI CASTG 2 cut(s) 217, 252
VpaK11BI GGWCC 2 cut(s) 75, 193
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.